Gene detail

Detail information of GWHGAAZE012953

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009370214.1	1.6101E-136	PREDICTED: steroid 5-alpha-reductase DET2 [Pyrus x bretschneideri]
Swissprot	tr\|Q2QDF6\|DET2_GOSHI	9E-133	Steroid 5-alpha-reductase DET2
trEMBL	tr\|W9S5J5\|W9S5J5_9ROSA	8E-137	Putative steroid reductase DET2 {ECO:0000313\|EMBL:EXB89961.1}
TAIR10	AT2G38050.1	2E-91	3-oxo-5-alpha-steroid 4-dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	94196491	94197291	+
GWHAAZE00000003	mRNA	94196491	94197291	+
GWHAAZE00000003	exon	94196491	94197291	+
GWHAAZE00000003	CDS	94196491	94197291	+

Transcript Sequence
>GWHTAAZE012967 ATGGATTATTATTATAATAACTATAATTCAGATCAAAACCTCTTCAACTACACCCTCCTCTCTCTTTACCTCATAGCCCCACCCACCTTCCTCTCTCTCCAATTCCTCTCTGCCCCTTACGGCAAGCACAGCCGCCCCGGGTGGGGCCCCACCCTCTCCCCACCCCTAGCATGGTTCCTCATGGAATCCCCCACCCTCTGGCTCACCCTCCTACTCTTCCCCCTCGGCCGCCACTTTTCCAACCCTAAATCCCTAACCCTAATCACCCCCTTCCTCCTCCACTACCTCCACCGCACCCTCATCTACCCTCTCCGCCTCCTCCTCTCCCCTCGCAAAACCACTTCTGGATTTCCGGTCACTGTCGCCGGCATGGCCTTCTTCTTCAACCTACTTAACTCCTACCTCCAGTCCAGATCGGTCTCTCACTACACTGATTATGAGAAGGATGATAAGTGGTTTTGGTGGCGGTTTTCCGGCGGATTGGCGGTATTCTTGAGTGGTATGGCGGTGAATGTTAAGTCGGATCTGGTTTTAGTGGGTCTGAGGGGGGAGGGGAGTGGGGGTTATAAGATACCCAAGGGTGGGCTTTTCGAGGTGGTGAGCTGTCCTAATTATTTTGGGGAGATTATGGAGTGGTTGGGTTGGACTTTGATGACTTGGTCTTGGGCCGGGTTTGGATTTTTTCTCTACACGTGTGCCAATTTGGTTCCCAGGGCACGGGCGAATCACGTGTGGTACTTGGAGAAGTTTGGGGAGGATTATCCCAAGAGAAGGAAAGCCGTGATTCCGTTTCTGTATTGA

Network for GWHGAAZE012953

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02544.17	Steroid_dh	117	266	2.80E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09591	DET2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Brassinosteroid biosynthesis	map00905

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0008202	biological_process	steroid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016020	cellular_component	membrane
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors
GO:0003865	molecular_function	3-oxo-5-alpha-steroid 4-dehydrogenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.143
	SRR3591706	second leaf	15.867
	SRR3591707	mature leaf	12.826
	SRR3591708	Shoot apex	24.676
	SRR3591709	Stem	43.792
	SRR3591710	White floral bud	27.282
	SRR3591711	White flower	18.835
	SRR3591712	Green floral bud	28.845
	SRR3591713	Yellow flower	11.824
SRP173429	SRR8316895	Juvenile bud stage	18.020
	SRR8316896	Juvenile bud stage	29.040
	SRR8316897	Juvenile bud stage	6.550
	SRR8316894	Third green stage	9.090
	SRR8316900	Third green stage	23.066
	SRR8316901	Third green stage	30.110
	SRR8316898	Complete white stage	10.380
	SRR8316899	Complete white stage	31.971
	SRR8316903	Complete white stage	18.548
	SRR8316902	Silver flowering stage	8.224
	SRR8316904	Silver flowering stage	10.800
	SRR8316905	Silver flowering stage	7.212
	SRR8316906	Gold flowering stage	11.571
	SRR8316907	Gold flowering stage	16.849
	SRR8316908	Gold flowering stage	9.911
SRP132670	SRR6706286	Control	26.298
	SRR6706287	Light intensity 50%	26.958
	SRR6706288	Light intensity 20%	26.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.915
	CNS0095593	Slightly white alabastrum(diploid) 2	36.165
	CNS0095594	Slightly white alabastrum(diploid) 3	35.488
	CNS0095595	Whole white alabastrum(diploid) 2	25.552
	CNS0095596	Whole white alabastrum(diploid) 3	21.898
	CNS0095597	Whole white alabastrum(diploid) 4	18.733
	CNS0095598	Silvery flower (diploied) 1	27.809
	CNS0095599	Silvery flower (diploied) 2	18.166
	CNS0095600	Silvery flower (diploied) 3	18.947
	CNS0095601	Golden flower (diploid) 1	21.974
	CNS0095602	Golden flower (diploid) 2	25.080
	CNS0095603	Golden flower (diploid) 3	21.551
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.827
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.600
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.555
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.096
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.201
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.520
	CNS0095610	Silvery flower (tetraploid) 1	31.418
	CNS0095611	Silvery flower (tetraploid) 2	28.797
	CNS0095612	Silvery flower (tetraploid) 3	26.739
	CNS0095613	Golden flower (tetraploid) 1	26.550
	CNS0095614	Golden flower (tetraploid) 2	27.927
	CNS0095615	Golden flower (tetraploid) 3	41.393
CRA001975	CRR073297	Stem 1	16.531
	CRR073298	Stem 2	18.803
	CRR073299	Stem 3	18.450
	CRR073300	Leaf 1	20.492
	CRR073301	Leaf 2	20.912
	CRR073302	Leaf 3	20.991
	CRR073303	Juvenile bud 1	19.439
	CRR073304	Juvenile bud 2	21.567
	CRR073305	Juvenile bud 3	28.753
	CRR073306	Third green 1	17.321
	CRR073307	Third green 2	20.648
	CRR073308	Third green 3	21.451
	CRR073309	Second white 1	8.987
	CRR073310	Second white 2	5.221
	CRR073311	Second white 3	3.148
	CRR073312	Silver flowering 1	4.077
	CRR073313	Silver flowering 2	3.740
	CRR073314	Silver flowering 3	2.768
	CRR073315	Gold flowering 1	7.833
	CRR073316	Gold flowering 2	7.391
	CRR073317	Gold flowering 3	11.729
	CRR073318	Tawny withering 1	24.623
	CRR073319	Tawny withering 2	18.104
	CRR073320	Tawny withering 3	24.039