Gene detail

Detail information of GWHGAAZE012916

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009761365.1	0	PREDICTED: probable pectate lyase 13 isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9SCP2\|PLY12_ARATH	0	Probable pectate lyase 12 (Precursor)
trEMBL	tr\|E7BTN2\|E7BTN2_VITVI	0	Pectate lyase {ECO:0000256\|RuleBase:RU361123}
TAIR10	AT3G53190.1	7E-154	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93736541	93743188	+
GWHAAZE00000003	mRNA	93736541	93743188	+
GWHAAZE00000003	exon	93736541	93736765	+
GWHAAZE00000003	exon	93737043	93737528	+
GWHAAZE00000003	exon	93738188	93738379	+
GWHAAZE00000003	exon	93740491	93740696	+
GWHAAZE00000003	exon	93742767	93743188	+
GWHAAZE00000003	CDS	93736541	93736765	+
GWHAAZE00000003	CDS	93737043	93737528	+
GWHAAZE00000003	CDS	93738188	93738379	+
GWHAAZE00000003	CDS	93740491	93740696	+
GWHAAZE00000003	CDS	93742767	93743025	+
GWHAAZE00000003	three_prime_UTR	93743026	93743188	+

Transcript Sequence
>GWHTAAZE012930 ATGATCGCCACCTCAACCACCACCGCTGACAACAATGCAGATTCAAAAGACCAACGCTCATCATGCCTCACCGGCAACCCAATAGACGATTGCTGGAGATGCGACCCAAACTGGGCCAAAAACCGCCAACGCCTCGCCGACTGTGCCATTGGCTTTGGCTCAGGCGCCGGTGGCGGCAAGGGTGGCCAGATCTACGTTGTGACTGACTCCTCCGACAATGACCCAGTGACCCCAACTCCAGGGACCCTCCGATACGCTGTCATCCAGACGGAGCCGCTATGGATTGTTTTCTCAGCTGACATGATGATCAAGCTCAAGCACGAGCTCATTGTCAACAGCTACAAGACGATCGATGGCCGTGGTGCTAACGTGCACATCACCGGTGGTGGGTGCATTACGCTCCAGTACGTCAGCAACGTCATTATACATAATGTACATGTTCACCACTGTGTGCCATCTGGGAATGTTAATGTGCGTTCGAGTCCAACGCATGTTGGGTGGAGAGGCAAATCGGACGGGGATGGGATCTCCATCTTTGGGTCGAGGAATGTGTGGATTGATCACTGTGCTCTTTCTCACTGTACGGACGGGTTGGTCGATGCTATAATGGGGTCCACAGCTATTACTATTTCGAATAATTATTTGTCTCATCACAATGAAGTTATGCTTTTGGGACATGATGATCGCTACTCACCTGATTCTGGAATGCAGGTAACTATAGCATTCAATCACTTTGGTGAGGGACTAGTGCAGCGTATGCCACGGTGCAGACGAGGGTATTTCCATGTGGTGAACAATGATTTCACGGAGTGGCAAATGTATGCTATTGGTGGTAGCGCTAACCCAACCATCAACAGCCAAGGCAATCGCTACACTGCCCCATTAAACCCCGATTCCAAGGAGGTGACAAAGCGTGTGGACACAGATGAAGGGGATTGGTCCGGGTGGAACTGGAGGACGGATGGTGACGTAATGGTAAATGGAGCATTCTTTGTGGCCTCTGGTGCCGGGATGACCACCCAGTATTCCAAGGCATCCAGCGTCGAGCCCAAGTCCGCTTCCTTCATTGACCGGCTCACCAGCACCGCCGGTGTCATTGGCGGACCCAGGGACAACACCGTGAGCATGTCTTCTTACCCCGGATTCAGTGGCGGTGGTGGGACCAGCACTGGTGACGGTGGTTCAGGCGGCTCAGGTGGCTCAGGCAGCGACGGTGACTTCTTCGGCATGATATTTGGGAGTGGTGCACGGCCACAGGCGCCACCTTCTACCACCACAACCATTTTTTCGTCTCTTTCGATTATTTCAATTTTGTACATTACCACCAACCATTGTGCTCTATTATCATTACCACTATTCTTACTATAACATCTCTATGAGAAAAAATATTAAAGTGGGAAAAGATCTGGGGATTCAATCAATTTATTGGTGTGGGTCCAATACTCGTTTTTTCCTTTGTTTTTCCTTTTGGGCTTTTCGCATGTAATTTTGGGGAATATATGGAATGCAAGGATGTATGATTAAAAAAAAT

Network for GWHGAAZE012916

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00544.20	Pectate_lyase_4	106	289	1.40E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01728	pel	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	98.786
	SRR3591706	second leaf	52.614
	SRR3591707	mature leaf	5.953
	SRR3591708	Shoot apex	85.533
	SRR3591709	Stem	28.998
	SRR3591710	White floral bud	10.476
	SRR3591711	White flower	4.487
	SRR3591712	Green floral bud	39.785
	SRR3591713	Yellow flower	0.272
SRP173429	SRR8316895	Juvenile bud stage	34.898
	SRR8316896	Juvenile bud stage	37.842
	SRR8316897	Juvenile bud stage	17.087
	SRR8316894	Third green stage	17.129
	SRR8316900	Third green stage	41.677
	SRR8316901	Third green stage	40.445
	SRR8316898	Complete white stage	3.806
	SRR8316899	Complete white stage	45.954
	SRR8316903	Complete white stage	5.681
	SRR8316902	Silver flowering stage	0.242
	SRR8316904	Silver flowering stage	0.418
	SRR8316905	Silver flowering stage	0.282
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.298
	SRR8316908	Gold flowering stage	0.411
SRP132670	SRR6706286	Control	33.362
	SRR6706287	Light intensity 50%	41.743
	SRR6706288	Light intensity 20%	45.628
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	69.503
	CNS0095593	Slightly white alabastrum(diploid) 2	86.460
	CNS0095594	Slightly white alabastrum(diploid) 3	63.321
	CNS0095595	Whole white alabastrum(diploid) 2	47.791
	CNS0095596	Whole white alabastrum(diploid) 3	49.492
	CNS0095597	Whole white alabastrum(diploid) 4	39.877
	CNS0095598	Silvery flower (diploied) 1	25.961
	CNS0095599	Silvery flower (diploied) 2	21.961
	CNS0095600	Silvery flower (diploied) 3	7.102
	CNS0095601	Golden flower (diploid) 1	18.019
	CNS0095602	Golden flower (diploid) 2	7.553
	CNS0095603	Golden flower (diploid) 3	7.987
	CNS0095604	Slightly white alabastrum(tetraploid) 1	48.266
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.409
	CNS0095606	Slightly white alabastrum(tetraploid) 3	86.339
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.900
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.884
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.906
	CNS0095610	Silvery flower (tetraploid) 1	0.238
	CNS0095611	Silvery flower (tetraploid) 2	2.226
	CNS0095612	Silvery flower (tetraploid) 3	1.420
	CNS0095613	Golden flower (tetraploid) 1	0.205
	CNS0095614	Golden flower (tetraploid) 2	0.228
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	85.792
	CRR073298	Stem 2	85.922
	CRR073299	Stem 3	107.060
	CRR073300	Leaf 1	100.118
	CRR073301	Leaf 2	94.587
	CRR073302	Leaf 3	108.058
	CRR073303	Juvenile bud 1	83.254
	CRR073304	Juvenile bud 2	68.388
	CRR073305	Juvenile bud 3	96.063
	CRR073306	Third green 1	4.558
	CRR073307	Third green 2	7.116
	CRR073308	Third green 3	4.551
	CRR073309	Second white 1	0.084
	CRR073310	Second white 2	0.034
	CRR073311	Second white 3	0.122
	CRR073312	Silver flowering 1	0.075
	CRR073313	Silver flowering 2	0.367
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	19.110
	CRR073316	Gold flowering 2	27.075
	CRR073317	Gold flowering 3	33.674
	CRR073318	Tawny withering 1	86.906
	CRR073319	Tawny withering 2	67.571
	CRR073320	Tawny withering 3	98.682