Detail information of GWHGAAZE012908


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271586.30PREDICTED: 4-coumarate--CoA ligase-like 5 [Vitis vinifera]
Swissprottr|Q84P21|4CLL5_ARATH6E-1684-coumarate--CoA ligase-like 5
trEMBLtr|A5BPU4|A5BPU4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN70408.1}
TAIR10AT1G20510.13E-137OPC-8:0 CoA ligase1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9361732293622536-
GWHAAZE00000003mRNA9361732293622536-
GWHAAZE00000003exon9362113393622536-
GWHAAZE00000003exon9362096993621036-
GWHAAZE00000003exon9361754893617650-
GWHAAZE00000003exon9361732293617447-
GWHAAZE00000003CDS9362113393622536-
GWHAAZE00000003CDS9362096993621036-
GWHAAZE00000003CDS9361754893617650-
GWHAAZE00000003CDS9361732293617447-
Transcript Sequence

Network for GWHGAAZE012908

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding654632.40E-101
PF13193.7AMP-binding_C4735484.50E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10526OPCL1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
alpha-Linolenic acid metabolismmap00592

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.001
SRR3591706second leaf0.439
SRR3591707mature leaf0.585
SRR3591708Shoot apex1.801
SRR3591709Stem1.524
SRR3591710White floral bud3.353
SRR3591711White flower2.971
SRR3591712Green floral bud2.092
SRR3591713Yellow flower2.813
SRP173429 SRR8316895Juvenile bud stage 3.340
SRR8316896Juvenile bud stage 4.030
SRR8316897Juvenile bud stage 1.202
SRR8316894Third green stage 1.833
SRR8316900Third green stage 3.194
SRR8316901Third green stage 4.097
SRR8316898Complete white stage 2.081
SRR8316899Complete white stage 6.319
SRR8316903Complete white stage 3.600
SRR8316902Silver flowering stage2.249
SRR8316904Silver flowering stage2.286
SRR8316905Silver flowering stage0.778
SRR8316906Gold flowering stage 2.089
SRR8316907Gold flowering stage 1.704
SRR8316908Gold flowering stage 2.176
SRP132670SRR6706286Control3.066
SRR6706287Light intensity 50%3.957
SRR6706288Light intensity 20%3.180
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.137
CNS0095593Slightly white alabastrum(diploid) 214.552
CNS0095594Slightly white alabastrum(diploid) 310.259
CNS0095595Whole white alabastrum(diploid) 212.555
CNS0095596Whole white alabastrum(diploid) 38.070
CNS0095597Whole white alabastrum(diploid) 47.177
CNS0095598Silvery flower (diploied) 16.384
CNS0095599Silvery flower (diploied) 29.589
CNS0095600Silvery flower (diploied) 36.400
CNS0095601Golden flower (diploid) 13.446
CNS0095602Golden flower (diploid) 24.552
CNS0095603Golden flower (diploid) 33.063
CNS0095604Slightly white alabastrum(tetraploid) 113.634
CNS0095605Slightly white alabastrum(tetraploid) 210.942
CNS0095606Slightly white alabastrum(tetraploid) 314.950
CNS0095607Whole white alabastrum(tetraploid) 111.745
CNS0095608Whole white alabastrum(tetraploid) 220.322
CNS0095609Whole white alabastrum(tetraploid) 33.774
CNS0095610Silvery flower (tetraploid) 15.950
CNS0095611Silvery flower (tetraploid) 25.512
CNS0095612Silvery flower (tetraploid) 34.877
CNS0095613Golden flower (tetraploid) 19.960
CNS0095614Golden flower (tetraploid) 23.211
CNS0095615Golden flower (tetraploid) 35.616
CRA001975CRR073297Stem 114.848
CRR073298Stem 210.499
CRR073299Stem 33.990
CRR073300Leaf 18.177
CRR073301Leaf 211.484
CRR073302Leaf 32.958
CRR073303Juvenile bud 13.699
CRR073304Juvenile bud 212.743
CRR073305Juvenile bud 34.495
CRR073306Third green 15.150
CRR073307Third green 22.926
CRR073308Third green 34.398
CRR073309Second white 10.647
CRR073310Second white 21.200
CRR073311Second white 30.296
CRR073312Silver flowering 10.400
CRR073313Silver flowering 20.177
CRR073314Silver flowering 30.179
CRR073315Gold flowering 12.659
CRR073316Gold flowering 22.641
CRR073317Gold flowering 32.133
CRR073318Tawny withering 13.705
CRR073319Tawny withering 22.956
CRR073320Tawny withering 32.846