Detail information of GWHGAAZE012805


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002263206.20PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X1 [Vitis vinifera]
Swissprottr|P55195|PUR6_VIGAC0Phosphoribosylaminoimidazole carboxylase, chloroplastic (Precursor; Fragment)
trEMBLtr|F6HVK5|F6HVK5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB58718.1}
TAIR10AT2G37690.10phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9178525691794912-
GWHAAZE00000003mRNA9178525691794912-
GWHAAZE00000003exon9179487591794912-
GWHAAZE00000003exon9179456491794779-
GWHAAZE00000003exon9179436591794476-
GWHAAZE00000003exon9179401391794075-
GWHAAZE00000003exon9179378591793916-
GWHAAZE00000003exon9179249791792584-
GWHAAZE00000003exon9179195591791979-
GWHAAZE00000003exon9178936391789510-
GWHAAZE00000003exon9178902991789202-
GWHAAZE00000003exon9178759191787678-
GWHAAZE00000003exon9178736891787484-
GWHAAZE00000003exon9178711491787211-
GWHAAZE00000003exon9178690291787020-
GWHAAZE00000003exon9178646191786513-
GWHAAZE00000003exon9178630591786399-
GWHAAZE00000003exon9178557691785682-
GWHAAZE00000003exon9178525691785349-
GWHAAZE00000003CDS9179487591794912-
GWHAAZE00000003CDS9179456491794779-
GWHAAZE00000003CDS9179436591794476-
GWHAAZE00000003CDS9179401391794075-
GWHAAZE00000003CDS9179378591793916-
GWHAAZE00000003CDS9179249791792584-
GWHAAZE00000003CDS9179195591791979-
GWHAAZE00000003CDS9178936391789510-
GWHAAZE00000003CDS9178902991789202-
GWHAAZE00000003CDS9178759191787678-
GWHAAZE00000003CDS9178736891787484-
GWHAAZE00000003CDS9178711491787211-
GWHAAZE00000003CDS9178690291787020-
GWHAAZE00000003CDS9178646191786513-
GWHAAZE00000003CDS9178630591786399-
GWHAAZE00000003CDS9178557691785682-
GWHAAZE00000003CDS9178525691785349-
Transcript Sequence

Network for GWHGAAZE012805

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02222.23ATP-grasp1341881.10E-10
PF02222.23ATP-grasp2262954.40E-25
PF17769.2PurK_C3223849.60E-18
PF00731.21AIRC4044571.00E-17
PF00731.21AIRC4915671.00E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11808ADE2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Purine metabolismmap00230

Gene Ontology

GO term OntologyName
GO:0006189biological_process'de novo' IMP biosynthetic process
GO:0004638molecular_functionphosphoribosylaminoimidazole carboxylase activity
GO:0005524molecular_functionATP binding
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.034
SRR3591706second leaf19.350
SRR3591707mature leaf14.761
SRR3591708Shoot apex29.281
SRR3591709Stem16.796
SRR3591710White floral bud10.386
SRR3591711White flower17.759
SRR3591712Green floral bud19.964
SRR3591713Yellow flower15.458
SRP173429 SRR8316895Juvenile bud stage 16.569
SRR8316896Juvenile bud stage 18.850
SRR8316897Juvenile bud stage 11.392
SRR8316894Third green stage 8.697
SRR8316900Third green stage 22.391
SRR8316901Third green stage 18.829
SRR8316898Complete white stage 3.903
SRR8316899Complete white stage 26.492
SRR8316903Complete white stage 5.991
SRR8316902Silver flowering stage2.743
SRR8316904Silver flowering stage3.982
SRR8316905Silver flowering stage1.379
SRR8316906Gold flowering stage 6.163
SRR8316907Gold flowering stage 3.746
SRR8316908Gold flowering stage 6.031
SRP132670SRR6706286Control22.062
SRR6706287Light intensity 50%22.600
SRR6706288Light intensity 20%26.109
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.292
CNS0095593Slightly white alabastrum(diploid) 213.991
CNS0095594Slightly white alabastrum(diploid) 39.669
CNS0095595Whole white alabastrum(diploid) 29.824
CNS0095596Whole white alabastrum(diploid) 39.463
CNS0095597Whole white alabastrum(diploid) 48.193
CNS0095598Silvery flower (diploied) 118.300
CNS0095599Silvery flower (diploied) 213.536
CNS0095600Silvery flower (diploied) 310.183
CNS0095601Golden flower (diploid) 111.936
CNS0095602Golden flower (diploid) 210.450
CNS0095603Golden flower (diploid) 310.299
CNS0095604Slightly white alabastrum(tetraploid) 114.863
CNS0095605Slightly white alabastrum(tetraploid) 211.894
CNS0095606Slightly white alabastrum(tetraploid) 333.121
CNS0095607Whole white alabastrum(tetraploid) 18.169
CNS0095608Whole white alabastrum(tetraploid) 24.904
CNS0095609Whole white alabastrum(tetraploid) 324.970
CNS0095610Silvery flower (tetraploid) 115.723
CNS0095611Silvery flower (tetraploid) 216.628
CNS0095612Silvery flower (tetraploid) 39.461
CNS0095613Golden flower (tetraploid) 15.399
CNS0095614Golden flower (tetraploid) 210.679
CNS0095615Golden flower (tetraploid) 32.741
CRA001975CRR073297Stem 127.522
CRR073298Stem 224.216
CRR073299Stem 323.142
CRR073300Leaf 128.287
CRR073301Leaf 225.135
CRR073302Leaf 322.002
CRR073303Juvenile bud 120.765
CRR073304Juvenile bud 215.619
CRR073305Juvenile bud 321.392
CRR073306Third green 11.495
CRR073307Third green 20.924
CRR073308Third green 31.876
CRR073309Second white 13.068
CRR073310Second white 21.858
CRR073311Second white 30.987
CRR073312Silver flowering 10.904
CRR073313Silver flowering 21.049
CRR073314Silver flowering 30.664
CRR073315Gold flowering 119.472
CRR073316Gold flowering 235.756
CRR073317Gold flowering 318.337
CRR073318Tawny withering 119.382
CRR073319Tawny withering 212.642
CRR073320Tawny withering 316.704