Gene detail

Detail information of GWHGAAZE012723

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009588206.1	0	PREDICTED: uncharacterized protein LOC104085787 isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	3E-102	Lysine-specific demethylase JMJ25
trEMBL	tr\|M5X6U5\|M5X6U5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ21777.1}
TAIR10	AT4G00990.1	0	Transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	90409421	90420763	+
GWHAAZE00000003	mRNA	90409421	90420763	+
GWHAAZE00000003	exon	90409421	90411904	+
GWHAAZE00000003	exon	90412864	90412994	+
GWHAAZE00000003	exon	90413791	90413890	+
GWHAAZE00000003	exon	90413982	90414114	+
GWHAAZE00000003	exon	90414686	90414749	+
GWHAAZE00000003	exon	90415627	90416314	+
GWHAAZE00000003	exon	90416575	90416904	+
GWHAAZE00000003	exon	90418138	90418642	+
GWHAAZE00000003	exon	90419217	90419302	+
GWHAAZE00000003	exon	90419799	90419918	+
GWHAAZE00000003	exon	90420476	90420546	+
GWHAAZE00000003	exon	90420691	90420763	+
GWHAAZE00000003	CDS	90409421	90411904	+
GWHAAZE00000003	CDS	90412864	90412994	+
GWHAAZE00000003	CDS	90413791	90413890	+
GWHAAZE00000003	CDS	90413982	90414114	+
GWHAAZE00000003	CDS	90414686	90414749	+
GWHAAZE00000003	CDS	90415627	90416314	+
GWHAAZE00000003	CDS	90416575	90416904	+
GWHAAZE00000003	CDS	90418138	90418642	+
GWHAAZE00000003	CDS	90419217	90419302	+
GWHAAZE00000003	CDS	90419799	90419918	+
GWHAAZE00000003	CDS	90420476	90420546	+
GWHAAZE00000003	CDS	90420691	90420763	+

Transcript Sequence
>GWHTAAZE012737 ATGGTGGAGAATGGTAATGAAGATGATGATAATCAGAAGTGGACGAGGTGTAAAAGGAAGGGGTCAAAAAATTGGCAGTGTAAAGAGAGAGCATTGAGTGGTAGTTCTTATTGTGAGAAGCACTTCAACAAAAATCGTCAAAGAAGCTCAAAGAACAAGCTTGAGCTCTCCAATGGCGGTGGAGTCACCGCTGGAACTAGGTTTTCGGTGCTTCAGGGTGGACCGGTGGAGGTTCCGACCGGTGAGGTGTTAACGGAAAGAGATGGTGGAGCTGGGGGGGAACTTAGTATAGCTATAGGAGGTAATGGTGCTTTTGATCTTAATTGTGAAGGAGCCGATCGCGAGCCTGGCGGTGCAATGGACGGTGGAGATGAGATTGTGCCACCGAATGGAGATGTTGGAGCTGAGGGAGGGATGGTTAAGAAGAAGGATGGGCGAGGGAGGCCCAAGGGTTCAATGAATGTGAAGAAAATTCTACAGGGCGAAGAAAATTTGGGAATGGGTGATGGAATTGAAGGTATCAATGGAATTGTTGAGAGGAAGGGAAAAAGAGGGAGGCCTGATGGCGGAGCAGTAGCATTCTGGTCTGGTGAGGTACTTGGGGAAAGAGATGGTGGAGTTGAGGGCTCGTTCAGTATAGGTATAGGAGGAAATGGCAGTTTTGATCTTAAACGTGAAGGAGTTGATTGTTGGTCTGGAGGTGGAATGGACGGTGGAGATGAGAGTGTGCAACAGAGTGGAGATGTTGGAGCTGAAGGTGAGACTGTTAAGAGGAAAGGTAGGCTTGGACGGCCTAAGGGTTCAAAGAACAAAAAGAAGATTCTCCCGGGCAAAGAAAATCCGGTAATGGCTGGTGGAATTGTGAGTGAAAATGTAATTGTGAAGAGAGAAGTTGGATATCAGCATTCATTTAGTATAGGTATAGGAGGTAATGGTGGTTTTGATCTTAATGGTGAAGGAGTTGATTGCCAGCCCGGCAGTGGAATGTATGGTGGAGATGGGGGTGAAGGAGCTGATTGCCAGCCCGATGGTGGAATGGATGGTGGAGATGAGAGTTTGCGACAGAATGGAGATGTTGGAGCTGAAGGTGGGATTGTTATGAGGAAAACTAGACTTGGACGGCCTAAGGGTTTGAAGAACAAAAAGAAAATTCTTCAGGGTGAAGAAAATTTGGGAATGACTGGTGGAATTGTGAGTGGAAATATAACTGTTGAGATAGATGGTGGAGATCAGGGTTTGTTTAGTATTGGTACAGGAGGTAATGGCAGTTTTGATCTTAGTGGTCAAGGAGTTAATTGCCAGCCTGGTAGTGGAATGGACGGTGAAAATGAGAGTTTGCAACGGAATGGAGATGTTGGAGCTGAAGGTGAGACTGTTAAGAGGAGAGTTGGGCTTGGACGGCCTAAGGGTTCAGAGAACAAAAAGAAAATTCTTCAGGGTGAAGAAAATTTGGAAATGGCTGGTGGAATTGTGAGTGGAAATGGAATTGTTGAGAGGAAGGAAAGAAGAGGGAGGCCTAAGGGTTCAAAAAACAAGAAGAAACTTGTTACAACTAAAGGAAACAAGGGATTGGTAGGCGCAGTTGTTGGGTATAATGATGGCAGAGATGTGATTGTTAAGAGGAAAGATGGACGGGGACGGCCTAAGGGTTCGAAGACCAAGAAGAAAACTGTTTTGACCGATTGTGGATTGTTAGGTATGGTTGTAGATTATAGTAATGGTGGAGATGTTACTGTTAAGAGGAAAGGCAAACTTGGACGGCCTGCGGGCTCAAAGAATAAAAAGAAAATTCTTGAAACTGAAAATAATGGGGATAATGTAGTTAGTGAAGGTGGTAAAAATTGTGGTGTAGATGATAATGTTAAGATGAAAGATAGACGGGGACGGCCTAAGGGTTCGAAGACCAAGAAGAAAACTGTTCCGACCGAAGGAAGTTGTGGATTGTTAGGTATAGTTGTAGATTATAGTAATGTTGGAGATGTTATTGTTAAGAGGAAAGGCAAACTTGGACGGCCTGTGGGTTCAAAGAACAAAAAGAAAATTCTTGAAACTGAAAATGGGGATAATGTAGTTAGTGAAGGTGGTAAAAATTGTGGTGTAGATGATAATTTACCTCAACATATGGAGATTGAGAAACCAGATCTTGGAGGTAAAGATCTGAGCTGTGATGGAGAAAAGAACGTGTGGGCGGGTTCAAATACTGAAATACCAATTCTTCAGGGTACATTAAGGGAGAAACCAAAATTTGTTGCTGAAGAGAAGAATCATGTTGGTAAAGGTGCTAATGAAATTGGTGGCAGTGATGAGGGCGTAGCCCTAAAAAGAAAGTGTGGTCGACCCATTCTTGAATCCACCATTGGTCAGAAACGGCCTAGGGGAAGGCCGAGGATTTATTTTGATGAAACGCATAAACGAACATGCATAGGAGACCAGGATGCTAGTGAGAAAGGAAAAGTTGATGGGTTTGCAAATGGAGGCATTTCTGATGCTACCAGTTGGAAATTGGATCAACGGCGTTCAAAGTGTCACCAATGCCAGAGGAATGACAAAACTGCTTTCATTGTTTGTTCAAATTGCGTGAGGAAACGTTATTGCTACGAGTGTGTTGCAAAGTGGTATCCTGAGAGATCAAAGGAGGAAGTCAAGAATTTATGCCCATTTTGTTGTGGCAACTGCAACTGCATAGCATGTCTTCAAGCGGATAGAATTGTAAAGGCCAGACATAAGGAAGCTAACAAGAATATCAGATTGCAAAGATCACTTTATTTGCTACGCAAAACTCTACCTCTCCTCAGGCATATCCAAGAGGAACAGAACTCTGAGCTAGATGTGGAAACACACATACGTGGTGTTAAATTGACAGAAGAAGATATATCGAAATTTGCAATTGACGAAGATGACCGCGTGTACTGTGACAATTGCAATACATCCATTGTCAATTTCCACAGAAGATGCCCAAATGCGGATTGTTCTTACGATCTCTGCCTCAACTGCTCTCGGGAACTCAGAAAAGGTATCCAACCAGGAGGCAATGAATCGGAGTCTTCCTTCCATCAGTTTGTTGAACGATCAAACGGTCAGGATTTGCCCAATAACTTCCCTGAATGGGCAGCAAATATAGATGGCAGTATCGCTTGCCCTCCTAAAGAACGTGGTGGTTGTGGTAATGGATTTCTAGTACTCGGACGCATATTTGAAGCCAATTGGGTGGACAGACTAATCAACGGTGCAGAATTACTTACTTTGAATCACCGGTTACCAGATGATGATGTTTTGCAGCATTGTACTTTGTGCCGTCCTACTTGTACAGAAGAGGAACGGAAATGTAATCCTGAGGTAAGGAGAGCAGCTTTGAGGGAAAATAGTCCTGATAATTTTCTCTATTGCCCAGATGCTGTTGCTTCTGGGGATAGTGAATTTGACCATTTTCAAATGCACTGGAGGAGAGGTGAACCGGTAATAGTTAGGAATGTACTGGCAAAGACTTCGGGTCTTAGTTGGGAGCCAATGGTTATGTGGAGGGCTTTTAGAAATGCTAGGAAGAAATTGAAGGAGGAGACTTTCTGTGTCAAGGCTATTGATTGCTTTGATTGGTGTCAGGTTGAGATTAACATTCATCAGTTCTTCAGGGGATATTTAGAGGGCCGAAGGCATAGAAATGGGTGGCCTGAGATGTTGAAGCTTAAAGATTGGCCGCCAACGAATTCTTTTGAAGAATGTTTGCCTAGGCATGGTGCTGAGTTTATTGATATGCTTCCCTACAGTGATTATACTCATCCTAAATCGGGTGTTTTAAATCTTGCTACAAAACTTCCAGATAGTGCTCCAAAACCTGACCTTGGGCCAAAAACTTACATAGCTTATGGGTTCTCGGAGGAACTTGGTAGAGGCGATTCAGTGACAAAACTGCACTGCGACATTTCTGATGCGGTAAACATACTGACACACACAACCAAAGTGAAGATTCCTTCATGGCAATGCAAAACCATTAACAAATTGCAGAAGGAATATGAGGCTGATGACTTAAGTGAGCTAATAAATATTTCTGCTGCGAGTAAGTTAATTCCTGGGTGTTTGGATACAGAGAAAAGCACACTGAGTAGTTCTGGGTTAAAAAAAGACATGGGCATGGAGGGTGAAAGTCATAATTTATTTTCTTTGAATGGTCAACCTGATAAATCATCCGGCTTCATTGATGTTGATCGATCTATTGTGCCTGATTACACAAATGGAGATTCAAACGAACAGGTAGCAGATCAACTTGAATTTAAAGATTCTTGCAGCAATAAAAAATGTTCCGACTCTTCTGACATTTTACTTGGAGGTGCGGTTTGGGACATCTTTCGTAGGCAAGATGTACCCAAGATCATTGAATATTTGCAGAAGCATTGGACAGAATTTCGTGGCATCAATAATGCTCCTTTGAAATCCGTGGGGGTTGAGCCATGGACATTTGAGCAATACCTTGGTGAGGCCGTGTTCATTCCTGCAGGATGCCCACATCAAGTGAGGAATAGACAGTCATGCATTAAAGTGGCTCTCGATTTTGTATCCCCTGATAATGTTCAAGAATGCATCCGGTTAACAGAGGAGTTCCGTTTGCTTCCAAAATCCCATAGATCTAAGGAAGATATATTAGAGGTGAAGAAGATGGCACTGTATGCTGCGAGCCGTGGTGTTGCTGAAGCCACCGAGCTGATGTCCAAACTTAGTTCAATGAGGCCAGGTGAGCTGGAGCTGGAGCGGGAGCGGGAGCAAGCTGTTGCAACTATAGGCCATAATTAG

Network for GWHGAAZE012723

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08879.11	WRC	15	53	4.00E-09
PF02373.23	JmjC	1470	1516	3.70E-10

Protein Sequence

>GWHPAAZE012730
MVENGNEDDDNQKWTRCKRKGSKNWQCKERALSGSSYCEKHFNKNRQRSSKNKLELSNGGGVTAGTRFSVLQGGPVEVPTGEVLTERDGGAGGELSIAIGGNGAFDLNCEGADREPGGAMDGGDEIVPPNGDVGAEGGMVKKKDGRGRPKGSMNVKKILQGEENLGMGDGIEGINGIVERKGKRGRPDGGAVAFWSGEVLGERDGGVEGSFSIGIGGNGSFDLKREGVDCWSGGGMDGGDESVQQSGDVGAEGETVKRKGRLGRPKGSKNKKKILPGKENPVMAGGIVSENVIVKREVGYQHSFSIGIGGNGGFDLNGEGVDCQPGSGMYGGDGGEGADCQPDGGMDGGDESLRQNGDVGAEGGIVMRKTRLGRPKGLKNKKKILQGEENLGMTGGIVSGNITVEIDGGDQGLFSIGTGGNGSFDLSGQGVNCQPGSGMDGENESLQRNGDVGAEGETVKRRVGLGRPKGSENKKKILQGEENLEMAGGIVSGNGIVERKERRGRPKGSKNKKKLVTTKGNKGLVGAVVGYNDGRDVIVKRKDGRGRPKGSKTKKKTVLTDCGLLGMVVDYSNGGDVTVKRKGKLGRPAGSKNKKKILETENNGDNVVSEGGKNCGVDDNVKMKDRRGRPKGSKTKKKTVPTEGSCGLLGIVVDYSNVGDVIVKRKGKLGRPVGSKNKKKILETENGDNVVSEGGKNCGVDDNLPQHMEIEKPDLGGKDLSCDGEKNVWAGSNTEIPILQGTLREKPKFVAEEKNHVGKGANEIGGSDEGVALKRKCGRPILESTIGQKRPRGRPRIYFDETHKRTCIGDQDASEKGKVDGFANGGISDATSWKLDQRRSKCHQCQRNDKTAFIVCSNCVRKRYCYECVAKWYPERSKEEVKNLCPFCCGNCNCIACLQADRIVKARHKEANKNIRLQRSLYLLRKTLPLLRHIQEEQNSELDVETHIRGVKLTEEDISKFAIDEDDRVYCDNCNTSIVNFHRRCPNADCSYDLCLNCSRELRKGIQPGGNESESSFHQFVERSNGQDLPNNFPEWAANIDGSIACPPKERGGCGNGFLVLGRIFEANWVDRLINGAELLTLNHRLPDDDVLQHCTLCRPTCTEEERKCNPEVRRAALRENSPDNFLYCPDAVASGDSEFDHFQMHWRRGEPVIVRNVLAKTSGLSWEPMVMWRAFRNARKKLKEETFCVKAIDCFDWCQVEINIHQFFRGYLEGRRHRNGWPEMLKLKDWPPTNSFEECLPRHGAEFIDMLPYSDYTHPKSGVLNLATKLPDSAPKPDLGPKTYIAYGFSEELGRGDSVTKLHCDISDAVNILTHTTKVKIPSWQCKTINKLQKEYEADDLSELINISAASKLIPGCLDTEKSTLSSSGLKKDMGMEGESHNLFSLNGQPDKSSGFIDVDRSIVPDYTNGDSNEQVADQLEFKDSCSNKKCSDSSDILLGGAVWDIFRRQDVPKIIEYLQKHWTEFRGINNAPLKSVGVEPWTFEQYLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPDNVQECIRLTEEFRLLPKSHRSKEDILEVKKMALYAASRGVAEATELMSKLSSMRPGELELEREREQAVATIGHN

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.977
	SRR3591706	second leaf	9.994
	SRR3591707	mature leaf	9.137
	SRR3591708	Shoot apex	15.427
	SRR3591709	Stem	11.177
	SRR3591710	White floral bud	11.240
	SRR3591711	White flower	11.395
	SRR3591712	Green floral bud	10.108
	SRR3591713	Yellow flower	6.584
SRP173429	SRR8316895	Juvenile bud stage	11.116
	SRR8316896	Juvenile bud stage	13.653
	SRR8316897	Juvenile bud stage	6.318
	SRR8316894	Third green stage	6.108
	SRR8316900	Third green stage	11.883
	SRR8316901	Third green stage	11.180
	SRR8316898	Complete white stage	1.462
	SRR8316899	Complete white stage	7.673
	SRR8316903	Complete white stage	7.834
	SRR8316902	Silver flowering stage	2.422
	SRR8316904	Silver flowering stage	5.696
	SRR8316905	Silver flowering stage	2.536
	SRR8316906	Gold flowering stage	6.883
	SRR8316907	Gold flowering stage	7.006
	SRR8316908	Gold flowering stage	7.988
SRP132670	SRR6706286	Control	12.096
	SRR6706287	Light intensity 50%	11.335
	SRR6706288	Light intensity 20%	12.509
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.860
	CNS0095593	Slightly white alabastrum(diploid) 2	6.432
	CNS0095594	Slightly white alabastrum(diploid) 3	6.442
	CNS0095595	Whole white alabastrum(diploid) 2	5.504
	CNS0095596	Whole white alabastrum(diploid) 3	3.228
	CNS0095597	Whole white alabastrum(diploid) 4	4.955
	CNS0095598	Silvery flower (diploied) 1	11.660
	CNS0095599	Silvery flower (diploied) 2	10.600
	CNS0095600	Silvery flower (diploied) 3	9.185
	CNS0095601	Golden flower (diploid) 1	9.705
	CNS0095602	Golden flower (diploid) 2	10.802
	CNS0095603	Golden flower (diploid) 3	10.514
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.394
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.111
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.361
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.304
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.730
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.537
	CNS0095610	Silvery flower (tetraploid) 1	9.620
	CNS0095611	Silvery flower (tetraploid) 2	9.835
	CNS0095612	Silvery flower (tetraploid) 3	5.805
	CNS0095613	Golden flower (tetraploid) 1	3.246
	CNS0095614	Golden flower (tetraploid) 2	7.769
	CNS0095615	Golden flower (tetraploid) 3	4.083
CRA001975	CRR073297	Stem 1	13.733
	CRR073298	Stem 2	13.373
	CRR073299	Stem 3	6.613
	CRR073300	Leaf 1	10.761
	CRR073301	Leaf 2	9.272
	CRR073302	Leaf 3	4.839
	CRR073303	Juvenile bud 1	4.974
	CRR073304	Juvenile bud 2	3.011
	CRR073305	Juvenile bud 3	6.157
	CRR073306	Third green 1	1.052
	CRR073307	Third green 2	0.708
	CRR073308	Third green 3	1.309
	CRR073309	Second white 1	0.557
	CRR073310	Second white 2	1.278
	CRR073311	Second white 3	1.547
	CRR073312	Silver flowering 1	0.938
	CRR073313	Silver flowering 2	0.718
	CRR073314	Silver flowering 3	1.367
	CRR073315	Gold flowering 1	2.404
	CRR073316	Gold flowering 2	5.048
	CRR073317	Gold flowering 3	0.947
	CRR073318	Tawny withering 1	5.333
	CRR073319	Tawny withering 2	4.918
	CRR073320	Tawny withering 3	3.456