Detail information of GWHGAAZE012720


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277330.10PREDICTED: PP2A regulatory subunit TAP46 [Vitis vinifera]
Swissprottr|Q8LDQ4|TAP46_ARATH0PP2A regulatory subunit TAP46
trEMBLtr|E0CV55|E0CV55_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI23016.3}
TAIR10AT5G53000.12E-1242A phosphatase associated protein of 46 kD

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9036504190371367+
GWHAAZE00000003mRNA9036504190371367+
GWHAAZE00000003exon9036504190365287+
GWHAAZE00000003exon9036749090367576+
GWHAAZE00000003exon9036771390367817+
GWHAAZE00000003exon9036831090368471+
GWHAAZE00000003exon9036928990369324+
GWHAAZE00000003exon9036942090369491+
GWHAAZE00000003exon9036986690370149+
GWHAAZE00000003exon9037093290371367+
GWHAAZE00000003five_prime_UTR9036504190365191+
GWHAAZE00000003CDS9036519290365287+
GWHAAZE00000003CDS9036749090367576+
GWHAAZE00000003CDS9036771390367817+
GWHAAZE00000003CDS9036831090368471+
GWHAAZE00000003CDS9036928990369324+
GWHAAZE00000003CDS9036942090369491+
GWHAAZE00000003CDS9036986690370149+
GWHAAZE00000003CDS9037093290371187+
GWHAAZE00000003three_prime_UTR9037118890371367+
Transcript Sequence

Network for GWHGAAZE012720

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04177.13TAP42333538.40E-60
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K17606IGBP1, TAP42 Autophagy - animal map04140
Autophagy - yeastmap04138
Autophagy - othermap04136

Gene Ontology

GO term OntologyName
GO:0009966biological_processregulation of signal transduction

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf47.224
SRR3591706second leaf25.830
SRR3591707mature leaf17.488
SRR3591708Shoot apex35.528
SRR3591709Stem43.138
SRR3591710White floral bud45.393
SRR3591711White flower48.157
SRR3591712Green floral bud48.687
SRR3591713Yellow flower42.678
SRP173429 SRR8316895Juvenile bud stage 36.638
SRR8316896Juvenile bud stage 51.942
SRR8316897Juvenile bud stage 27.682
SRR8316894Third green stage 19.446
SRR8316900Third green stage 57.455
SRR8316901Third green stage 58.690
SRR8316898Complete white stage 25.565
SRR8316899Complete white stage 57.945
SRR8316903Complete white stage 37.126
SRR8316902Silver flowering stage25.294
SRR8316904Silver flowering stage36.087
SRR8316905Silver flowering stage16.994
SRR8316906Gold flowering stage 50.674
SRR8316907Gold flowering stage 56.642
SRR8316908Gold flowering stage 50.862
SRP132670SRR6706286Control72.681
SRR6706287Light intensity 50%69.040
SRR6706288Light intensity 20%72.526
CNP0000432CNS0095592Slightly white alabastrum(diploid) 156.984
CNS0095593Slightly white alabastrum(diploid) 258.258
CNS0095594Slightly white alabastrum(diploid) 354.549
CNS0095595Whole white alabastrum(diploid) 254.362
CNS0095596Whole white alabastrum(diploid) 346.782
CNS0095597Whole white alabastrum(diploid) 450.164
CNS0095598Silvery flower (diploied) 147.126
CNS0095599Silvery flower (diploied) 251.399
CNS0095600Silvery flower (diploied) 350.854
CNS0095601Golden flower (diploid) 156.193
CNS0095602Golden flower (diploid) 245.048
CNS0095603Golden flower (diploid) 345.648
CNS0095604Slightly white alabastrum(tetraploid) 150.156
CNS0095605Slightly white alabastrum(tetraploid) 247.390
CNS0095606Slightly white alabastrum(tetraploid) 356.181
CNS0095607Whole white alabastrum(tetraploid) 137.925
CNS0095608Whole white alabastrum(tetraploid) 237.794
CNS0095609Whole white alabastrum(tetraploid) 348.085
CNS0095610Silvery flower (tetraploid) 151.976
CNS0095611Silvery flower (tetraploid) 241.645
CNS0095612Silvery flower (tetraploid) 342.714
CNS0095613Golden flower (tetraploid) 143.056
CNS0095614Golden flower (tetraploid) 251.414
CNS0095615Golden flower (tetraploid) 331.699
CRA001975CRR073297Stem 140.818
CRR073298Stem 240.078
CRR073299Stem 337.416
CRR073300Leaf 145.256
CRR073301Leaf 250.970
CRR073302Leaf 344.700
CRR073303Juvenile bud 146.880
CRR073304Juvenile bud 237.820
CRR073305Juvenile bud 350.619
CRR073306Third green 144.742
CRR073307Third green 240.203
CRR073308Third green 333.509
CRR073309Second white 128.404
CRR073310Second white 233.939
CRR073311Second white 331.640
CRR073312Silver flowering 132.788
CRR073313Silver flowering 231.037
CRR073314Silver flowering 332.329
CRR073315Gold flowering 114.819
CRR073316Gold flowering 221.445
CRR073317Gold flowering 310.892
CRR073318Tawny withering 133.024
CRR073319Tawny withering 227.867
CRR073320Tawny withering 334.062