Gene detail

Detail information of GWHGAAZE012641

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010662139.1	0	PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like isoform X1 [Vitis vinifera]
Swissprot	tr\|Q94F87\|CMT2_ARATH	0	DNA (cytosine-5)-methyltransferase CMT2
trEMBL	tr\|A0A022RXY6\|A0A022RXY6_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU45367.1}
TAIR10	AT4G19020.1	5E-164	chromomethylase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88964666	88970641	+
GWHAAZE00000003	mRNA	88964666	88970641	+
GWHAAZE00000003	exon	88964666	88965130	+
GWHAAZE00000003	exon	88966486	88966520	+
GWHAAZE00000003	exon	88966642	88966741	+
GWHAAZE00000003	exon	88967350	88967457	+
GWHAAZE00000003	exon	88967547	88967666	+
GWHAAZE00000003	exon	88967833	88967917	+
GWHAAZE00000003	exon	88968458	88968651	+
GWHAAZE00000003	exon	88968754	88968819	+
GWHAAZE00000003	exon	88968965	88969207	+
GWHAAZE00000003	exon	88969692	88969750	+
GWHAAZE00000003	exon	88969823	88969889	+
GWHAAZE00000003	exon	88970249	88970641	+
GWHAAZE00000003	CDS	88964666	88965130	+
GWHAAZE00000003	CDS	88966486	88966520	+
GWHAAZE00000003	CDS	88966642	88966741	+
GWHAAZE00000003	CDS	88967350	88967457	+
GWHAAZE00000003	CDS	88967547	88967666	+
GWHAAZE00000003	CDS	88967833	88967917	+
GWHAAZE00000003	CDS	88968458	88968651	+
GWHAAZE00000003	CDS	88968754	88968819	+
GWHAAZE00000003	CDS	88968965	88969207	+
GWHAAZE00000003	CDS	88969692	88969750	+
GWHAAZE00000003	CDS	88969823	88969889	+
GWHAAZE00000003	CDS	88970249	88970641	+

Transcript Sequence
>GWHTAAZE012655 ATGGCGGCGACGGAGGAGAATGAGAACCTCCCCATACATTCTCCTCCTCAACTCTCCTCAAATCTCTCTCTCTCACTATCTCCCTCGCCGTTGACCGAAAATAGAAACCCTAAATTCCCAATTTTCGAAGCACTATCCTCCGATCAGACTTCAGCATTTTCAAATCCCTTAAAATCATCATCTCCGTCGCCGTTAACTGACAATGGAAACCCTAAATTCCCAATTTGCGAGGCATTATCCTCCGATCAGGCATTGTCCAATCACAAGTCAATTAGACGGTCCCCAAGGCTCCTCCTCGATAATGGAAACAACAATGGAGCTGAAGAGAATTCGAGAAATCCAACTAAACGGCCGGCAAAGAAGCAGAAAAAGGGGAAATCCACGCACATCGTGTCTTTCTTCGTCGGAGATCCGGTACCTGATGAAGAAGCTCAACACAGATGGCCATGGCGATATGGATTGAGGGGACCGCAAACTGAGGAAAACACCTTGAAATCTAATAAGGATGATGATGAAGACGCATTGATATTGAATGTAAAATGCCATTATTCTCAAGCTGAAGTGGACAAGTGTGTCTTCAATCTCGGGGATTGTGCATATGGTGACAAAAGAAACCAGAATTATGTTGGCAAGATTCTAGAATTTTTTCAAACAATTGAAGGAGAAGATTATTTTAGGGTTCAGTGGTTCTTTAGAGCAGAAGATACGGTAATCAAAGATGAAGCAAAGCATCATGAGAAGCAGCGTCTGTTCTGTTCTACTTTGATGAATGACAATTTATTAGATTGCATTGTTTCAAAAGTAAAAGTTGTGCAAATAGTGCCATGTGTAAATTTGAAATCAAAATCTATTCCCCCCTGTGATTTTTATTATGATATGAAATACTCAGTGGATTATTCAACATTTTGTACAGATAGTAGTAATTTACTTGTGTCTCCTGAAATGAAGAAGATTCATACAAATGGCATGATGTGTAATTCTGAGGAAATGTCTGGTTATGAACCTTACAAGTCAGAACTAGCATTGTTAGATCTCTATTCAGGGTGTGGAGGAATGTCTACGGGGTTGTGCCTTGGAGCCAAAGTTGCCAATGTAGATCTTGTCACGAAATGGGCCGTTGAAATTGATACATCTGCATGTGAAAGCTTGAAGTTGAACCATCCAGAGACACAAATTAGGAATGAATCTGCGGAGGATTTCCTTGATTTATTGAAGGAATGGGACAAACTCTGCAAACGATATGCAAAGGATGTCACAACACCGGAACTAAATTCTAGACTGAAGAGAGGAGCTGACAAAAATAGAAACACTAAACCCGAGAATCAAATTCCATCTGGTGAATATGAAGTTGGAAGCTTGGTTGATATATGCTATGGTGTTTGTGGGGAAACAACCAAACGAGGGCTTAAATTTCAGGTGCGGTGGGTTGGCTATAGCCCAAGCGAGGATACATGGGAACCAATTGGAGGGTTAAGTAAATGCCAAGATAAGATACAGGATTTTGTAATAAAGGGGGTGAAGGCTAAAATATTGCCACGTCCGGGAGATGTTGATGTTATTTGTGGAGGTCCTCCCTGCCAAGGTATAAGTGGCTATAATCGCTTCAGAAACGTTGATTCTCCTTTGGATGATGAAAGAAATCATCAAATTGTAGTGTTTATGGATATCATCGACTTCTTAAGGCCAAAGTACGTTCTGATGGAAAATGTGGTTGACATTTTGAGGTTTGCTAATGGTTGCCTTGGAAGATATGCTTTAAGTCGTTTGGTTGATATGAATTACCAAGCAAGACTAGGAATTATGGCTGCTGGTTGCTATGGTCTTCCCCAATTCCGCTTACGTGCTTTCCTTTGGGGCGCCCATCCTCAAGAGGCAAGTACTCTGTTACTACACATGTTGTATAGATGTTACAAGCTTGGCAAAAAACCCACTTGA

Network for GWHGAAZE012641

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01426.19	BAH	196	303	1.50E-09
PF00385.25	Chromo	464	501	5.20E-09
PF00145.18	DNA_methylase	511	624	3.90E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00558	DNMT1, dcm	Metabolic pathways	map01100
K00558	DNMT1, dcm	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0003682	molecular_function	chromatin binding
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.286
	SRR3591706	second leaf	5.868
	SRR3591707	mature leaf	2.879
	SRR3591708	Shoot apex	13.290
	SRR3591709	Stem	5.307
	SRR3591710	White floral bud	3.687
	SRR3591711	White flower	2.409
	SRR3591712	Green floral bud	5.823
	SRR3591713	Yellow flower	0.942
SRP173429	SRR8316895	Juvenile bud stage	5.154
	SRR8316896	Juvenile bud stage	8.581
	SRR8316897	Juvenile bud stage	3.577
	SRR8316894	Third green stage	3.970
	SRR8316900	Third green stage	7.187
	SRR8316901	Third green stage	6.713
	SRR8316898	Complete white stage	1.908
	SRR8316899	Complete white stage	6.349
	SRR8316903	Complete white stage	3.482
	SRR8316902	Silver flowering stage	1.236
	SRR8316904	Silver flowering stage	2.578
	SRR8316905	Silver flowering stage	1.267
	SRR8316906	Gold flowering stage	3.309
	SRR8316907	Gold flowering stage	2.890
	SRR8316908	Gold flowering stage	1.685
SRP132670	SRR6706286	Control	6.008
	SRR6706287	Light intensity 50%	6.797
	SRR6706288	Light intensity 20%	7.079
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.821
	CNS0095593	Slightly white alabastrum(diploid) 2	4.991
	CNS0095594	Slightly white alabastrum(diploid) 3	2.916
	CNS0095595	Whole white alabastrum(diploid) 2	5.482
	CNS0095596	Whole white alabastrum(diploid) 3	3.395
	CNS0095597	Whole white alabastrum(diploid) 4	4.344
	CNS0095598	Silvery flower (diploied) 1	4.339
	CNS0095599	Silvery flower (diploied) 2	3.968
	CNS0095600	Silvery flower (diploied) 3	2.359
	CNS0095601	Golden flower (diploid) 1	4.326
	CNS0095602	Golden flower (diploid) 2	2.787
	CNS0095603	Golden flower (diploid) 3	2.660
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.589
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.733
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.506
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.121
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.515
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.095
	CNS0095610	Silvery flower (tetraploid) 1	4.089
	CNS0095611	Silvery flower (tetraploid) 2	2.460
	CNS0095612	Silvery flower (tetraploid) 3	2.585
	CNS0095613	Golden flower (tetraploid) 1	1.266
	CNS0095614	Golden flower (tetraploid) 2	2.715
	CNS0095615	Golden flower (tetraploid) 3	1.482
CRA001975	CRR073297	Stem 1	6.203
	CRR073298	Stem 2	6.260
	CRR073299	Stem 3	2.399
	CRR073300	Leaf 1	5.562
	CRR073301	Leaf 2	4.638
	CRR073302	Leaf 3	1.233
	CRR073303	Juvenile bud 1	1.568
	CRR073304	Juvenile bud 2	0.804
	CRR073305	Juvenile bud 3	1.799
	CRR073306	Third green 1	0.333
	CRR073307	Third green 2	0.181
	CRR073308	Third green 3	0.289
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.296
	CRR073311	Second white 3	0.141
	CRR073312	Silver flowering 1	0.392
	CRR073313	Silver flowering 2	0.017
	CRR073314	Silver flowering 3	0.560
	CRR073315	Gold flowering 1	0.211
	CRR073316	Gold flowering 2	0.521
	CRR073317	Gold flowering 3	0.229
	CRR073318	Tawny withering 1	3.583
	CRR073319	Tawny withering 2	2.241
	CRR073320	Tawny withering 3	3.070