Gene detail

Detail information of GWHGAAZE012587

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009630820.1	0	PREDICTED: vacuolar amino acid transporter 1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9FKS8\|LHT1_ARATH	0.000000003	Lysine histidine transporter 1
trEMBL	tr\|F6HND9\|F6HND9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56158.1}
TAIR10	AT2G39130.1	1E-169	Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	88116101	88127524	+
GWHAAZE00000003	mRNA	88116101	88127524	+
GWHAAZE00000003	exon	88116101	88116198	+
GWHAAZE00000003	exon	88117058	88117277	+
GWHAAZE00000003	exon	88117980	88118314	+
GWHAAZE00000003	exon	88120092	88120305	+
GWHAAZE00000003	exon	88120746	88120810	+
GWHAAZE00000003	exon	88121270	88121293	+
GWHAAZE00000003	exon	88122000	88122031	+
GWHAAZE00000003	exon	88122964	88123144	+
GWHAAZE00000003	exon	88123936	88124155	+
GWHAAZE00000003	exon	88125499	88125690	+
GWHAAZE00000003	exon	88126337	88126372	+
GWHAAZE00000003	exon	88126715	88126866	+
GWHAAZE00000003	exon	88127275	88127318	+
GWHAAZE00000003	exon	88127441	88127524	+
GWHAAZE00000003	five_prime_UTR	88116101	88116198	+
GWHAAZE00000003	five_prime_UTR	88117058	88117092	+
GWHAAZE00000003	CDS	88117093	88117277	+
GWHAAZE00000003	CDS	88117980	88118314	+
GWHAAZE00000003	CDS	88120092	88120305	+
GWHAAZE00000003	CDS	88120746	88120810	+
GWHAAZE00000003	CDS	88121270	88121293	+
GWHAAZE00000003	CDS	88122000	88122031	+
GWHAAZE00000003	CDS	88122964	88123144	+
GWHAAZE00000003	CDS	88123936	88124155	+
GWHAAZE00000003	CDS	88125499	88125690	+
GWHAAZE00000003	CDS	88126337	88126372	+
GWHAAZE00000003	CDS	88126715	88126866	+
GWHAAZE00000003	CDS	88127275	88127318	+
GWHAAZE00000003	CDS	88127441	88127524	+

Transcript Sequence
>GWHTAAZE012601 GCGTAAAAAGGCATAAACCTTTTGTTTCTCTCTATCTCTCTCTGCATAAAAAGGCATAAACCTTTTGAACAGAAAGCATCACAAAAGCCTAATCTCAAGGATCTGTGAAAAGGAAGGAATATTGAGAAGAGAAATGAAGAACTCAGTATCGGATCAGAGTTTTTACATTGAGAGCGATGATGAAGAAGAAAATGAATCCAACAAAGGCGAAAATGAAGATGCGAATGATTCAGATAATTCCATCTATTCAAATGATAACAACAGGCAACAAAGCAAGCCCAATTCGTTAAACACCACCACATGGCCTCAAAGTTACAGGCAATCAATCGATCTTTACAGTAGCGTACCATCTCCAAGTCTTAACTTTTTGGGCACACCTACATTGTCGAGATTAGGCAGTTCCTTTTTTTCTTCATCATTTACAAGACGACACACTCCTGAGATATTACCCTCTTTGTCTAAACCTTTGATACCACCTACAACAGTACCTGATGAGCAACCGCCCCAACAAAGGCGAAGTTCCCAATCCCTTCTTCCTCCTATTCCATCCAGGAAGTCTAATATAAGGAAAGTTGATCAAAAGTATCCGTCTAAAGTCTCACATGAACTACCCATTTCTGGACACAGCTCCTACGGCCAAGCCGTGATTAATGGAATTAATGTTCTATGTGGAGTAGGAATACTGTCTACTCCTTACGCAGTGAGAGAAGGAGGATGGTATGGGCTTTCTATATTGTTTATCTTTTCAATGCTTTCTTTCTACACCGGGATCCTCCTTCGTCACTGCTTGGATAGCCAACCTGGTCTTGAGACTTACCCGGACATCGGTCAGGCTGCCTTTGGCACTTTGGACGCATTGTTATCTCCATCTTTTGAGATTTCTAGTTCAGATGTATTGAGGTCAGATTTCACTTTTTTCATCAATATTAGAGATAATATTGTACGTGGAATTATACGGACGAAGTATGGGTCTTGTTACTGTCCAATGGCTTGTTGTGTTGAATACATAATTTTGGAAGGTGATAACCTATCATCTTTGTTTCCCAATGCGCATCTAAGTTTGGGAGGATTTGAATTTAATTCGCAATTGCTGTTTGTGGTGATGACCACTCTTGCTGTTCTTCCTACGGTTTGGCTTCGAGACCTCAGTGTTCTTAGTTACATTTCTGCTGGGGGAGTTATTGCATCAGTGTTGGTAGTGATCTGCTTGTTTTGGGTTGGGTTGGTGGATAAAGTTGGCACCTACAGCAAAGGGACAACACTAAACCTCTCTGGTCTTCCTGTTGCTATTGGTTTATATGGTTACTGCTACTCAGGACATGCTGTTTTTCCCAATATATACACTTCAATGGCTAAACCAAGCCAATTTCCCCTAGTCCTCTTAACTTGTTTTACCATTTGTACCGTGTTGTATGCTGGTGTTGCTGTGATGGGATACAAGATGTTTGGAGAATTAACAGAGTCGCAATTCACTCTCAACCTGCCCCAGGATTTGGTTGTCTCAAAAATTGCAGTGTGGACTACAGTAAGACCGATTTTAAATTTTTTTCTTCTTGAAAATGGCCACAATTTGAAGATTTGGTGGTTAATCCATTTACCAAATATCCTTTTTCTCCAAGCCACATATGCATTAACAATCTCTCCGGTGGCAATGAGTTTGGAGGAATTGATTCCGTCAAGACATAACAAATCTCGTGTCTACTCAATACTCATCAGAACCACATTGGTCGTCTCTACTCTACTTGTAGGTCTCGCCATCCCTTTCTTTGGACTGGTGATGGCATTGATTGGATCCTTACTAACAATGCTAGTAACCTTGATACTTCCTTGTGCTTGCTTCCTAAGCATCTTGAGGGATAAAGTATCTCGCTTTCAGGTACGCTTAATTGTTATATGA

Network for GWHGAAZE012587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.19	Aa_trans	164	238	7.20E-14
PF01490.19	Aa_trans	287	579	1.70E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15015	SLC32A, VGAT	GABAergic synapse	map04727
		Retrograde endocannabinoid signaling	map04723
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.570
	SRR3591706	second leaf	2.891
	SRR3591707	mature leaf	1.133
	SRR3591708	Shoot apex	4.453
	SRR3591709	Stem	16.566
	SRR3591710	White floral bud	233.092
	SRR3591711	White flower	67.485
	SRR3591712	Green floral bud	20.060
	SRR3591713	Yellow flower	56.055
SRP173429	SRR8316895	Juvenile bud stage	2.897
	SRR8316896	Juvenile bud stage	2.897
	SRR8316897	Juvenile bud stage	1.711
	SRR8316894	Third green stage	2.878
	SRR8316900	Third green stage	14.989
	SRR8316901	Third green stage	9.601
	SRR8316898	Complete white stage	20.104
	SRR8316899	Complete white stage	5.934
	SRR8316903	Complete white stage	31.657
	SRR8316902	Silver flowering stage	20.944
	SRR8316904	Silver flowering stage	41.630
	SRR8316905	Silver flowering stage	22.112
	SRR8316906	Gold flowering stage	28.792
	SRR8316907	Gold flowering stage	38.208
	SRR8316908	Gold flowering stage	36.073
SRP132670	SRR6706286	Control	20.406
	SRR6706287	Light intensity 50%	16.459
	SRR6706288	Light intensity 20%	7.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.002
	CNS0095593	Slightly white alabastrum(diploid) 2	7.212
	CNS0095594	Slightly white alabastrum(diploid) 3	9.460
	CNS0095595	Whole white alabastrum(diploid) 2	20.518
	CNS0095596	Whole white alabastrum(diploid) 3	24.699
	CNS0095597	Whole white alabastrum(diploid) 4	20.873
	CNS0095598	Silvery flower (diploied) 1	54.276
	CNS0095599	Silvery flower (diploied) 2	44.507
	CNS0095600	Silvery flower (diploied) 3	78.580
	CNS0095601	Golden flower (diploid) 1	69.724
	CNS0095602	Golden flower (diploid) 2	102.945
	CNS0095603	Golden flower (diploid) 3	96.224
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.794
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.815
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.468
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.936
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.083
	CNS0095610	Silvery flower (tetraploid) 1	43.358
	CNS0095611	Silvery flower (tetraploid) 2	103.752
	CNS0095612	Silvery flower (tetraploid) 3	71.258
	CNS0095613	Golden flower (tetraploid) 1	34.513
	CNS0095614	Golden flower (tetraploid) 2	37.898
	CNS0095615	Golden flower (tetraploid) 3	195.825
CRA001975	CRR073297	Stem 1	2.642
	CRR073298	Stem 2	1.971
	CRR073299	Stem 3	2.001
	CRR073300	Leaf 1	5.300
	CRR073301	Leaf 2	4.667
	CRR073302	Leaf 3	2.596
	CRR073303	Juvenile bud 1	4.424
	CRR073304	Juvenile bud 2	4.380
	CRR073305	Juvenile bud 3	4.123
	CRR073306	Third green 1	28.924
	CRR073307	Third green 2	14.122
	CRR073308	Third green 3	24.141
	CRR073309	Second white 1	13.975
	CRR073310	Second white 2	10.339
	CRR073311	Second white 3	12.792
	CRR073312	Silver flowering 1	10.375
	CRR073313	Silver flowering 2	9.269
	CRR073314	Silver flowering 3	11.906
	CRR073315	Gold flowering 1	1.694
	CRR073316	Gold flowering 2	3.073
	CRR073317	Gold flowering 3	1.595
	CRR073318	Tawny withering 1	2.723
	CRR073319	Tawny withering 2	1.468
	CRR073320	Tawny withering 3	2.912