Detail information of GWHGAAZE012503


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006448209.10hypothetical protein CICLE_v10014721mg [Citrus clementina]
Swissprottr|Q9ZSQ4|PGMC_POPTN0Phosphoglucomutase, cytoplasmic
trEMBLtr|V4W5U2|V4W5U2_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR61449.1}
TAIR10AT1G70730.30Phosphoglucomutase/phosphomannomutase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8663339986640712-
GWHAAZE00000003mRNA8663339986640712-
GWHAAZE00000003exon8663339986633470-
GWHAAZE00000003exon8663356386633679-
GWHAAZE00000003exon8663389886634030-
GWHAAZE00000003exon8663465686634732-
GWHAAZE00000003exon8663484386635018-
GWHAAZE00000003exon8663513286635213-
GWHAAZE00000003exon8663530286635365-
GWHAAZE00000003exon8663561986635714-
GWHAAZE00000003exon8663579686635950-
GWHAAZE00000003exon8663606786636166-
GWHAAZE00000003exon8663625486636313-
GWHAAZE00000003exon8663663186636731-
GWHAAZE00000003exon8663683586636954-
GWHAAZE00000003exon8663739986637461-
GWHAAZE00000003exon8663760286637715-
GWHAAZE00000003exon8663843286638487-
GWHAAZE00000003exon8663928586639393-
GWHAAZE00000003exon8664063286640712-
GWHAAZE00000003CDS8664063286640712-
GWHAAZE00000003CDS8663928586639393-
GWHAAZE00000003CDS8663843286638487-
GWHAAZE00000003CDS8663760286637715-
GWHAAZE00000003CDS8663739986637461-
GWHAAZE00000003CDS8663683586636954-
GWHAAZE00000003CDS8663663186636731-
GWHAAZE00000003CDS8663625486636313-
GWHAAZE00000003CDS8663606786636166-
GWHAAZE00000003CDS8663579686635950-
GWHAAZE00000003CDS8663561986635714-
GWHAAZE00000003CDS8663530286635365-
GWHAAZE00000003CDS8663513286635213-
GWHAAZE00000003CDS8663484386635018-
GWHAAZE00000003CDS8663465686634732-
GWHAAZE00000003CDS8663389886634030-
GWHAAZE00000003CDS8663356386633679-
GWHAAZE00000003CDS8663339986633470-
Transcript Sequence

Network for GWHGAAZE012503

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02878.17PGM_PMM_I171732.60E-29
PF02879.17PGM_PMM_II2093173.00E-13
PF02880.17PGM_PMM_III3254481.30E-28
PF00408.21PGM_PMM_IV5065534.00E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01835pgm Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Glycolysis / Gluconeogenesismap00010
Pentose phosphate pathwaymap00030
Galactose metabolismmap00052
Starch and sucrose metabolismmap00500
Amino sugar and nucleotide sugar metabolismmap00520
Purine metabolismmap00230
Streptomycin biosynthesismap00521

Gene Ontology

GO term OntologyName
GO:0071704biological_processorganic substance metabolic process
GO:0005975biological_processcarbohydrate metabolic process
GO:0016868molecular_functionintramolecular transferase activity, phosphotransferases
GO:0000287molecular_functionmagnesium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf187.800
SRR3591706second leaf138.984
SRR3591707mature leaf99.344
SRR3591708Shoot apex88.886
SRR3591709Stem155.617
SRR3591710White floral bud146.320
SRR3591711White flower113.870
SRR3591712Green floral bud316.452
SRR3591713Yellow flower111.511
SRP173429 SRR8316895Juvenile bud stage 108.860
SRR8316896Juvenile bud stage 175.044
SRR8316897Juvenile bud stage 110.145
SRR8316894Third green stage 89.816
SRR8316900Third green stage 341.201
SRR8316901Third green stage 318.521
SRR8316898Complete white stage 95.380
SRR8316899Complete white stage 204.731
SRR8316903Complete white stage 131.237
SRR8316902Silver flowering stage84.758
SRR8316904Silver flowering stage117.583
SRR8316905Silver flowering stage57.900
SRR8316906Gold flowering stage 131.598
SRR8316907Gold flowering stage 151.060
SRR8316908Gold flowering stage 140.311
SRP132670SRR6706286Control212.901
SRR6706287Light intensity 50%215.975
SRR6706288Light intensity 20%231.171
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1145.976
CNS0095593Slightly white alabastrum(diploid) 2145.213
CNS0095594Slightly white alabastrum(diploid) 3150.456
CNS0095595Whole white alabastrum(diploid) 2168.268
CNS0095596Whole white alabastrum(diploid) 3196.912
CNS0095597Whole white alabastrum(diploid) 4152.696
CNS0095598Silvery flower (diploied) 1103.137
CNS0095599Silvery flower (diploied) 298.410
CNS0095600Silvery flower (diploied) 3166.303
CNS0095601Golden flower (diploid) 180.513
CNS0095602Golden flower (diploid) 2126.793
CNS0095603Golden flower (diploid) 3125.120
CNS0095604Slightly white alabastrum(tetraploid) 1267.034
CNS0095605Slightly white alabastrum(tetraploid) 2234.150
CNS0095606Slightly white alabastrum(tetraploid) 3223.543
CNS0095607Whole white alabastrum(tetraploid) 1273.772
CNS0095608Whole white alabastrum(tetraploid) 2307.897
CNS0095609Whole white alabastrum(tetraploid) 3441.902
CNS0095610Silvery flower (tetraploid) 1190.352
CNS0095611Silvery flower (tetraploid) 2181.281
CNS0095612Silvery flower (tetraploid) 3142.252
CNS0095613Golden flower (tetraploid) 181.940
CNS0095614Golden flower (tetraploid) 2135.621
CNS0095615Golden flower (tetraploid) 358.887
CRA001975CRR073297Stem 1160.435
CRR073298Stem 2157.730
CRR073299Stem 3158.434
CRR073300Leaf 1210.383
CRR073301Leaf 2203.058
CRR073302Leaf 3207.355
CRR073303Juvenile bud 1263.265
CRR073304Juvenile bud 2213.500
CRR073305Juvenile bud 3251.132
CRR073306Third green 1106.205
CRR073307Third green 289.519
CRR073308Third green 399.697
CRR073309Second white 1108.295
CRR073310Second white 276.145
CRR073311Second white 367.079
CRR073312Silver flowering 167.880
CRR073313Silver flowering 277.976
CRR073314Silver flowering 366.644
CRR073315Gold flowering 174.796
CRR073316Gold flowering 295.726
CRR073317Gold flowering 371.197
CRR073318Tawny withering 1117.937
CRR073319Tawny withering 294.935
CRR073320Tawny withering 3136.006