Detail information of GWHGAAZE012495


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003635099.10PREDICTED: cysteine protease ATG4 isoform X2 [Vitis vinifera]
Swissprottr|A2Q1V6|ATG4_MEDTR0Cysteine protease ATG4
trEMBLtr|D7TRB8|D7TRB8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI33041.3}
TAIR10AT2G44140.11E-142Peptidase family C54 protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8653269786536645+
GWHAAZE00000003mRNA8653269786536645+
GWHAAZE00000003exon8653269786533150+
GWHAAZE00000003exon8653325886533343+
GWHAAZE00000003exon8653354486533594+
GWHAAZE00000003exon8653372286534101+
GWHAAZE00000003exon8653486786535005+
GWHAAZE00000003exon8653591786535972+
GWHAAZE00000003exon8653629486536364+
GWHAAZE00000003exon8653644386536645+
GWHAAZE00000003CDS8653269786533150+
GWHAAZE00000003CDS8653325886533343+
GWHAAZE00000003CDS8653354486533594+
GWHAAZE00000003CDS8653372286534101+
GWHAAZE00000003CDS8653486786535005+
GWHAAZE00000003CDS8653591786535972+
GWHAAZE00000003CDS8653629486536364+
GWHAAZE00000003CDS8653644386536645+
Transcript Sequence

Network for GWHGAAZE012495

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03416.20Peptidase_C541364201.00E-84
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08342ATG4 Autophagy - animal map04140
Autophagy - yeastmap04138
Autophagy - othermap04136

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.600
SRR3591706second leaf20.567
SRR3591707mature leaf25.182
SRR3591708Shoot apex26.233
SRR3591709Stem38.888
SRR3591710White floral bud36.872
SRR3591711White flower40.316
SRR3591712Green floral bud30.474
SRR3591713Yellow flower47.800
SRP173429 SRR8316895Juvenile bud stage 13.501
SRR8316896Juvenile bud stage 16.586
SRR8316897Juvenile bud stage 15.096
SRR8316894Third green stage 8.068
SRR8316900Third green stage 20.404
SRR8316901Third green stage 21.565
SRR8316898Complete white stage 14.508
SRR8316899Complete white stage 31.711
SRR8316903Complete white stage 19.167
SRR8316902Silver flowering stage14.873
SRR8316904Silver flowering stage20.704
SRR8316905Silver flowering stage11.050
SRR8316906Gold flowering stage 36.710
SRR8316907Gold flowering stage 34.850
SRR8316908Gold flowering stage 38.638
SRP132670SRR6706286Control14.636
SRR6706287Light intensity 50%13.875
SRR6706288Light intensity 20%14.534
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.295
CNS0095593Slightly white alabastrum(diploid) 213.683
CNS0095594Slightly white alabastrum(diploid) 314.448
CNS0095595Whole white alabastrum(diploid) 215.298
CNS0095596Whole white alabastrum(diploid) 314.215
CNS0095597Whole white alabastrum(diploid) 414.822
CNS0095598Silvery flower (diploied) 120.133
CNS0095599Silvery flower (diploied) 215.838
CNS0095600Silvery flower (diploied) 334.021
CNS0095601Golden flower (diploid) 118.326
CNS0095602Golden flower (diploid) 232.963
CNS0095603Golden flower (diploid) 329.602
CNS0095604Slightly white alabastrum(tetraploid) 124.804
CNS0095605Slightly white alabastrum(tetraploid) 220.021
CNS0095606Slightly white alabastrum(tetraploid) 335.244
CNS0095607Whole white alabastrum(tetraploid) 117.557
CNS0095608Whole white alabastrum(tetraploid) 217.762
CNS0095609Whole white alabastrum(tetraploid) 329.205
CNS0095610Silvery flower (tetraploid) 144.658
CNS0095611Silvery flower (tetraploid) 245.913
CNS0095612Silvery flower (tetraploid) 352.026
CNS0095613Golden flower (tetraploid) 136.547
CNS0095614Golden flower (tetraploid) 240.203
CNS0095615Golden flower (tetraploid) 358.500
CRA001975CRR073297Stem 122.024
CRR073298Stem 222.575
CRR073299Stem 317.468
CRR073300Leaf 126.516
CRR073301Leaf 222.527
CRR073302Leaf 318.105
CRR073303Juvenile bud 122.856
CRR073304Juvenile bud 217.864
CRR073305Juvenile bud 321.226
CRR073306Third green 118.909
CRR073307Third green 217.924
CRR073308Third green 319.307
CRR073309Second white 120.313
CRR073310Second white 225.254
CRR073311Second white 326.537
CRR073312Silver flowering 126.579
CRR073313Silver flowering 220.329
CRR073314Silver flowering 322.514
CRR073315Gold flowering 115.210
CRR073316Gold flowering 220.259
CRR073317Gold flowering 314.584
CRR073318Tawny withering 119.700
CRR073319Tawny withering 218.213
CRR073320Tawny withering 317.802