Gene detail

Detail information of GWHGAAZE012467

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002527548.1	5.7839E-109	Anthranilate synthase component II, putative [Ricinus communis]
Swissprot	tr\|Q42565\|ASB1_ARATH	3E-104	Anthranilate synthase beta subunit 1, chloroplastic (Precursor)
trEMBL	tr\|B9SNH9\|B9SNH9_RICCO	2E-109	Anthranilate synthase component II, putative {ECO:0000313\|EMBL:EEF34857.1}
TAIR10	AT1G25220.1	1E-83	anthranilate synthase beta subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	86052844	86055405	+
GWHAAZE00000003	mRNA	86052844	86055405	+
GWHAAZE00000003	exon	86052844	86052911	+
GWHAAZE00000003	exon	86053093	86053130	+
GWHAAZE00000003	exon	86053230	86053397	+
GWHAAZE00000003	exon	86054087	86054186	+
GWHAAZE00000003	exon	86054867	86054999	+
GWHAAZE00000003	exon	86055301	86055405	+
GWHAAZE00000003	CDS	86052844	86052911	+
GWHAAZE00000003	CDS	86053093	86053130	+
GWHAAZE00000003	CDS	86053230	86053397	+
GWHAAZE00000003	CDS	86054087	86054186	+
GWHAAZE00000003	CDS	86054867	86054999	+
GWHAAZE00000003	CDS	86055301	86055405	+

Transcript Sequence
>GWHTAAZE012481 ATGGGAGAGCTGGGATGCAACTTTGAGGTTTACCGAAATGATGAACTTACTGTGGATGAACTGAAAAAGAAAAGACCAAGAGGAGTTCTTATATCCCCAGGACCAGGTGCACCTAAAGACTCAGGCATATCGATGCAAACTGTATTGGAACTTGGACCTATTGTACCGTTATTTGGTGTTTGTATGGGATTACAATGCATTGGTGAGGCTTTTGGAGGTGAGGCTAATAACCTAAAAGCTATGAATGTTGCTTTGTTTAACCTATATTTAACCGGGAAAATTGTTCGCTCTCCTTATGGTGTTATGCATGGGAAAAGTTCTCTAGTATATTACAATGAGAGCGAGGAAGATGGTTTGTTTGCAGACTTATCAAATCCTTTTATGGCTGGCAGATATCACAGCCTTGTAATCGAGAATGACAGTTTTCCTAAAGAACTCAAGCTGACTGCATGGACAGAGGATGGACTGATCATGGGTGCTCGGCACAAAAGATATAGACATCTACAGGGTGTACAATTCCATCCAGAGAGCCTCATTACCAAAGAGGGCAAGACGATTGTTCAAATTTTTATCAAACTGATAGAAAGAAAGGAAGCTGAGTCTCAGAATTAG

Network for GWHGAAZE012467

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00117.29	GATase	3	190	3.60E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01658	trpG	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Phenazine biosynthesis	map00405
		Quorum sensing	map02024
		Biofilm formation - Pseudomonas aeruginosa	map02025

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.272
	SRR3591706	second leaf	0.991
	SRR3591707	mature leaf	1.678
	SRR3591708	Shoot apex	2.234
	SRR3591709	Stem	4.109
	SRR3591710	White floral bud	1.204
	SRR3591711	White flower	2.573
	SRR3591712	Green floral bud	2.697
	SRR3591713	Yellow flower	2.385
SRP173429	SRR8316895	Juvenile bud stage	0.853
	SRR8316896	Juvenile bud stage	4.844
	SRR8316897	Juvenile bud stage	0.153
	SRR8316894	Third green stage	1.620
	SRR8316900	Third green stage	1.004
	SRR8316901	Third green stage	0.975
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.605
	SRR8316903	Complete white stage	0.133
	SRR8316902	Silver flowering stage	0.075
	SRR8316904	Silver flowering stage	0.019
	SRR8316905	Silver flowering stage	0.165
	SRR8316906	Gold flowering stage	0.637
	SRR8316907	Gold flowering stage	0.224
	SRR8316908	Gold flowering stage	0.309
SRP132670	SRR6706286	Control	0.237
	SRR6706287	Light intensity 50%	0.305
	SRR6706288	Light intensity 20%	0.264
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.862
	CNS0095593	Slightly white alabastrum(diploid) 2	1.577
	CNS0095594	Slightly white alabastrum(diploid) 3	3.559
	CNS0095595	Whole white alabastrum(diploid) 2	0.168
	CNS0095596	Whole white alabastrum(diploid) 3	0.513
	CNS0095597	Whole white alabastrum(diploid) 4	0.632
	CNS0095598	Silvery flower (diploied) 1	1.017
	CNS0095599	Silvery flower (diploied) 2	1.412
	CNS0095600	Silvery flower (diploied) 3	0.276
	CNS0095601	Golden flower (diploid) 1	2.537
	CNS0095602	Golden flower (diploid) 2	0.416
	CNS0095603	Golden flower (diploid) 3	0.692
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.008
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.463
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.584
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.165
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.300
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.760
	CNS0095610	Silvery flower (tetraploid) 1	0.079
	CNS0095611	Silvery flower (tetraploid) 2	0.318
	CNS0095612	Silvery flower (tetraploid) 3	0.025
	CNS0095613	Golden flower (tetraploid) 1	0.127
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.052
CRA001975	CRR073297	Stem 1	0.810
	CRR073298	Stem 2	0.674
	CRR073299	Stem 3	1.137
	CRR073300	Leaf 1	0.051
	CRR073301	Leaf 2	0.378
	CRR073302	Leaf 3	0.519
	CRR073303	Juvenile bud 1	0.450
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.118
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.057
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.063
	CRR073312	Silver flowering 1	0.029
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.012
	CRR073318	Tawny withering 1	0.200
	CRR073319	Tawny withering 2	0.311
	CRR073320	Tawny withering 3	0.691