Gene detail

Detail information of GWHGAAZE012450

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045366.1	0	Indeterminate(ID)-domain 5, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8GYC1\|IDD4_ARATH	6E-127	Protein indeterminate-domain 4, chloroplastic {ECO:0000303\|PubMed:16784536} (Precursor)
trEMBL	tr\|A0A061E9C5\|A0A061E9C5_THECC	0	Indeterminate(ID)-domain 5, putative isoform 1 {ECO:0000313\|EMBL:EOY01198.1}
TAIR10	AT2G02070.1	8E-85	indeterminate(ID)-domain 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	85638202	85641407	+
GWHAAZE00000003	mRNA	85638202	85641407	+
GWHAAZE00000003	exon	85638202	85638620	+
GWHAAZE00000003	exon	85640225	85641407	+
GWHAAZE00000003	CDS	85638202	85638620	+
GWHAAZE00000003	CDS	85640225	85641407	+

Transcript Sequence
>GWHTAAZE012464 ATGGTTTTGGATTTTTTATCAGATCCAGATGCGGAAGTCATAGCGCTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATTTGCGAGGTTTGCAGCAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAACAGAAAAGTACAAAAGAGGTGAAGAGGAAGGTCTATCTATGCCCCGAGCCCACTTGCGTCCACCATGACCCCTCTAGGGCTCTCGGTGACCTTACAGGTATTAAAAAGCACTTCTCTAGAAAGCACGGCGAGAAGAAGTATAAGTGCGAGAAGTGCTCTAAAAAATATGCGGTTCAGTCGGATTGGAAAGCCCACTCTAAGACTTGTGGTACTAGAGAATATAGATGTGATTGTGGTACTCTATTCTCAAGACGTGATAGCTTCATTACTCACAGAGCTTTTTGCGATGCACTGGCTCAGGAAAGTGCTAGGCACCCGTCTGCCCTCACCACCATTGGTAGCCACTTATTTGGCAATAGCCACATAAACTTAGGCCTATCTCAAGTGGGCGCACAAATTTCTCAACTCCACGATCCAAACCACCCATCTACCAACATGTTAAGGCTCAACAATGCCGTGGCACCCAAATACGAGCACCACATGCCTCAACAGTCCATGCCTTCACCTGCATATTTCATGCCTGATTCGAACCAATCTTATCAAAACCAGCACCAAAACCAGTTGATGCCAAACAAGCCCTTTCATGGTTTGATGCAACTCCCAGACCTTCAAAGTAACGCTAGCAACTCTCCCGCGGCCGCCAATCTCTTCAACCTGAGCTTCTTCTCTGGTAGCAATACGAGTAATAGTGAGGCTGGCAATAGTAATAATACAAACCTATCAGCATCTGGGTTTATGTTACCCGATCAATTTAGCAATGGGGGCGGACAAGGGACAAATATTTATCCAGGCGATCAAGTTTCTCTATACAACAGTCAGACACAACACGATAACCTGGCCCCTCACATGTCTGCCACCGCATTGCTTCAAAAGGCGGCTCAAATGGGCTCAACCACAAGCAATAACAGTTCCACTTTGTTAAAAGGTTTGGGTACTAGTTCTTCAACAAGCGGAACTAAATCCAACAGGCAGATTATGTCAAATAGTTTCGCTAGAAGTTATAGTGGATGCGCTGGAGGAGGAGGAGAGGGCTTGAGATCAGAGATGGAAAGTGATAATCAACTACAAGGACTAATGAATTCGCTCGCAAATGCAAATTCTTCTATATTTAGTGGCGGCAATACTCAACAAGAAAATGGATTTGGGGGATTTAGTGGGAGCGCAATGAGATTGGACCGGCCGCATAACAGCTTGAATTTTGGCAATATGGAAGAGGGTACAAAATTGAACAATCAAAATTTTTCGTTGAGTATCGGGGGATCAGATAGATTGACATTGGATTTTCTAGGGGTTGGAGGGGGAATAGTAAGAAATATGGGGGGTGGATTTTCACAGAGAGAACGACAGCATGGTGGGATTGATATGGGCAGTTTGGATCCTAAAATGGACTCGAGTCAGGCGGGTAATGTGTTTGGGGTTCCGAAAATGCAGTGA

Network for GWHGAAZE012450

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00096.27	zf-C2H2	27	49	0.0097

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.860
	SRR3591706	second leaf	21.204
	SRR3591707	mature leaf	32.660
	SRR3591708	Shoot apex	18.444
	SRR3591709	Stem	4.475
	SRR3591710	White floral bud	11.634
	SRR3591711	White flower	9.914
	SRR3591712	Green floral bud	11.898
	SRR3591713	Yellow flower	5.262
SRP173429	SRR8316895	Juvenile bud stage	7.460
	SRR8316896	Juvenile bud stage	6.529
	SRR8316897	Juvenile bud stage	2.891
	SRR8316894	Third green stage	6.036
	SRR8316900	Third green stage	13.053
	SRR8316901	Third green stage	11.237
	SRR8316898	Complete white stage	4.090
	SRR8316899	Complete white stage	25.208
	SRR8316903	Complete white stage	9.427
	SRR8316902	Silver flowering stage	4.247
	SRR8316904	Silver flowering stage	5.234
	SRR8316905	Silver flowering stage	2.254
	SRR8316906	Gold flowering stage	9.283
	SRR8316907	Gold flowering stage	8.037
	SRR8316908	Gold flowering stage	9.005
SRP132670	SRR6706286	Control	19.146
	SRR6706287	Light intensity 50%	18.862
	SRR6706288	Light intensity 20%	19.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.166
	CNS0095593	Slightly white alabastrum(diploid) 2	8.534
	CNS0095594	Slightly white alabastrum(diploid) 3	8.881
	CNS0095595	Whole white alabastrum(diploid) 2	9.292
	CNS0095596	Whole white alabastrum(diploid) 3	8.394
	CNS0095597	Whole white alabastrum(diploid) 4	10.676
	CNS0095598	Silvery flower (diploied) 1	17.111
	CNS0095599	Silvery flower (diploied) 2	9.531
	CNS0095600	Silvery flower (diploied) 3	13.466
	CNS0095601	Golden flower (diploid) 1	14.073
	CNS0095602	Golden flower (diploid) 2	15.216
	CNS0095603	Golden flower (diploid) 3	14.353
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.389
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.430
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.276
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.764
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.674
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.171
	CNS0095610	Silvery flower (tetraploid) 1	6.460
	CNS0095611	Silvery flower (tetraploid) 2	10.303
	CNS0095612	Silvery flower (tetraploid) 3	5.790
	CNS0095613	Golden flower (tetraploid) 1	3.472
	CNS0095614	Golden flower (tetraploid) 2	3.918
	CNS0095615	Golden flower (tetraploid) 3	4.151
CRA001975	CRR073297	Stem 1	23.448
	CRR073298	Stem 2	18.179
	CRR073299	Stem 3	15.048
	CRR073300	Leaf 1	20.144
	CRR073301	Leaf 2	21.900
	CRR073302	Leaf 3	13.010
	CRR073303	Juvenile bud 1	14.442
	CRR073304	Juvenile bud 2	7.167
	CRR073305	Juvenile bud 3	18.884
	CRR073306	Third green 1	3.574
	CRR073307	Third green 2	3.051
	CRR073308	Third green 3	3.393
	CRR073309	Second white 1	2.282
	CRR073310	Second white 2	3.292
	CRR073311	Second white 3	2.137
	CRR073312	Silver flowering 1	2.369
	CRR073313	Silver flowering 2	3.241
	CRR073314	Silver flowering 3	1.026
	CRR073315	Gold flowering 1	30.460
	CRR073316	Gold flowering 2	40.709
	CRR073317	Gold flowering 3	39.158
	CRR073318	Tawny withering 1	4.024
	CRR073319	Tawny withering 2	2.518
	CRR073320	Tawny withering 3	0.585