Gene detail

Detail information of GWHGAAZE012382

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282244.1	3.8016E-158	PREDICTED: uncharacterized protein LOC100250879 isoform X1 [Vitis vinifera]
trEMBL	tr\|F6HHA0\|F6HHA0_VITVI	2E-132	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51596.1}
TAIR10	AT3G24150.1	6E-69	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	84647733	84649420	+
GWHAAZE00000003	mRNA	84647733	84649420	+
GWHAAZE00000003	exon	84647733	84647833	+
GWHAAZE00000003	exon	84647921	84648035	+
GWHAAZE00000003	exon	84648137	84648251	+
GWHAAZE00000003	exon	84648492	84649420	+
GWHAAZE00000003	CDS	84647733	84647833	+
GWHAAZE00000003	CDS	84647921	84648035	+
GWHAAZE00000003	CDS	84648137	84648251	+
GWHAAZE00000003	CDS	84648492	84649420	+

Transcript Sequence
>GWHTAAZE012396 ATGCCTAGGCCAGGCCCAAGACCTTACGAGTGCGTGAGAAGGGCTTGGCACAGTGATAGGCACCAACCCATGAGAGGTTCAATCATTCAACAGATTTTTAGGGTCGTCCATGGAAGTCATAAACCTGCTACTAAAAAGAACAGAGAATGGCAAGAGAAGCTTCCGTGTGTAGTGTTGAAAGCTGAGGAAATCATGTACTCCAAAGCCAATTCTGAGGCTGAGTACATGGATCTTGAAACACTATGGGACCGAGTTAGTGATGCCATTAATACGATAATTCGGAGAGATGAGAGTACTGAAACTGGAGAGCTGCTGCCGCCTTGTGTTGAAGCTGCACTTAATCTGGGTTGTGTTCCTGTAAGAGCATCTCGAAGCCAAAGACATAGTAATCCAAGAACTTACCTCAGCTCAAGAAATCAAGAATCCGCATCTGTAGCTACGAAAAATTTGGATGGTGCAGTCAACGAACAACAAAATACCACATTATCATTCCATCCTCCCAACCAGTCCATCTTTGAGAGACCTACTCCCATGAACTTGACTCATTCGGTATCAGAATCAAACAGACATGCAATGCAGCAGAATAAAAATATCTCCTCAACTTCTGGCAGTTTTCTTTCGCCATACGAGAAATTTCCTTCTCCCAGAAGTAACCACTTCATCTCAGCGGAAAGTAGCGTGTCAGTGAATGTGGGTCGTGTTTATCCCTTGTATACGGGCACCCATGTTCAACCCGAACCCTTCCAGTCGGGCTTCCAAACCCAAACAAACTCAAACAATATAATTGTTGGCAGACCAATTTTCCCATTGATCACCGAGCCTGCTCAAATGGGTTGCTTGCAAAACTTGTTCTCCTCTCACAGGGGTGAAGAAAATGCTTCAAACAGAATCACCGAAGCACATTTGAGAGACAACCAAGAGAAGGCACCTGATCTTGCAGCATGTGACTTATCCTTGAGGTTGGGTATGTCTTCAGAACCATGCTCGAGTACTGCTAATATTGGTTCTAGCAGTTGTCAAGACAGGGATAGGATATGCAATCTATTGCCCCCTCAAAACAAGGTGTTTTCGTTCTTTCCCATGGAGACTGCTAATGATCCCTTTGGTTTCTCCAGAAGTGGGTGGAATTTTAAGGGTGAAAGTCAGAATGTGGAGGCTGCTTTTAGGAAGCGTAAAGCACCCTTTAATCACTCTATGGAGGATGGGCAACCGGAGTTCTTTAATCACTTTCCTGGTCGAATGAAAAGGCTAGACCCGTAG

Network for GWHGAAZE012382

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.099
	SRR3591706	second leaf	5.800
	SRR3591707	mature leaf	7.553
	SRR3591708	Shoot apex	13.314
	SRR3591709	Stem	13.471
	SRR3591710	White floral bud	13.889
	SRR3591711	White flower	14.004
	SRR3591712	Green floral bud	13.952
	SRR3591713	Yellow flower	6.904
SRP173429	SRR8316895	Juvenile bud stage	10.973
	SRR8316896	Juvenile bud stage	12.998
	SRR8316897	Juvenile bud stage	7.116
	SRR8316894	Third green stage	6.194
	SRR8316900	Third green stage	15.609
	SRR8316901	Third green stage	12.784
	SRR8316898	Complete white stage	3.314
	SRR8316899	Complete white stage	35.991
	SRR8316903	Complete white stage	6.678
	SRR8316902	Silver flowering stage	1.622
	SRR8316904	Silver flowering stage	2.910
	SRR8316905	Silver flowering stage	1.347
	SRR8316906	Gold flowering stage	5.088
	SRR8316907	Gold flowering stage	4.097
	SRR8316908	Gold flowering stage	4.373
SRP132670	SRR6706286	Control	9.254
	SRR6706287	Light intensity 50%	10.495
	SRR6706288	Light intensity 20%	9.924
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.487
	CNS0095593	Slightly white alabastrum(diploid) 2	9.146
	CNS0095594	Slightly white alabastrum(diploid) 3	8.651
	CNS0095595	Whole white alabastrum(diploid) 2	8.289
	CNS0095596	Whole white alabastrum(diploid) 3	3.238
	CNS0095597	Whole white alabastrum(diploid) 4	7.963
	CNS0095598	Silvery flower (diploied) 1	18.954
	CNS0095599	Silvery flower (diploied) 2	12.671
	CNS0095600	Silvery flower (diploied) 3	9.064
	CNS0095601	Golden flower (diploid) 1	13.749
	CNS0095602	Golden flower (diploid) 2	13.924
	CNS0095603	Golden flower (diploid) 3	13.294
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.215
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.384
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.535
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.901
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.608
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.798
	CNS0095610	Silvery flower (tetraploid) 1	6.024
	CNS0095611	Silvery flower (tetraploid) 2	7.545
	CNS0095612	Silvery flower (tetraploid) 3	5.153
	CNS0095613	Golden flower (tetraploid) 1	2.120
	CNS0095614	Golden flower (tetraploid) 2	4.350
	CNS0095615	Golden flower (tetraploid) 3	2.492
CRA001975	CRR073297	Stem 1	30.176
	CRR073298	Stem 2	23.040
	CRR073299	Stem 3	22.175
	CRR073300	Leaf 1	26.441
	CRR073301	Leaf 2	31.678
	CRR073302	Leaf 3	19.194
	CRR073303	Juvenile bud 1	19.161
	CRR073304	Juvenile bud 2	8.709
	CRR073305	Juvenile bud 3	26.734
	CRR073306	Third green 1	2.254
	CRR073307	Third green 2	1.964
	CRR073308	Third green 3	3.209
	CRR073309	Second white 1	3.459
	CRR073310	Second white 2	3.197
	CRR073311	Second white 3	4.701
	CRR073312	Silver flowering 1	1.889
	CRR073313	Silver flowering 2	2.446
	CRR073314	Silver flowering 3	2.044
	CRR073315	Gold flowering 1	12.349
	CRR073316	Gold flowering 2	14.661
	CRR073317	Gold flowering 3	8.075
	CRR073318	Tawny withering 1	10.652
	CRR073319	Tawny withering 2	12.504
	CRR073320	Tawny withering 3	13.754