Gene detail

Detail information of GWHGAAZE012295

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009606016.1	PREDICTED: phytochrome B [Nicotiana tomentosiformis]
Swissprot	tr\|P34094\|PHYB_SOLTU	Phytochrome B
trEMBL	tr\|B9U4G7\|B9U4G7_VITRI	Phytochrome {ECO:0000256\|PIRNR:PIRNR000084}
TAIR10	AT2G18790.1	phytochrome B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83142936	83148061	+
GWHAAZE00000003	mRNA	83142936	83148061	+
GWHAAZE00000003	exon	83142936	83143824	+
GWHAAZE00000003	exon	83144512	83145017	+
GWHAAZE00000003	exon	83145101	83145318	+
GWHAAZE00000003	exon	83146208	83146501	+
GWHAAZE00000003	exon	83147331	83148061	+
GWHAAZE00000003	CDS	83142936	83143824	+
GWHAAZE00000003	CDS	83144512	83145017	+
GWHAAZE00000003	CDS	83145101	83145318	+
GWHAAZE00000003	CDS	83146208	83146501	+
GWHAAZE00000003	CDS	83147331	83147550	+
GWHAAZE00000003	three_prime_UTR	83147551	83148061	+

Transcript Sequence
>GWHTAAZE012309 ATGCAGGCCTTCGGGCTCCAACTGAATATGGAGTTGCAGTTGGCAGCACAGTTGTCAGAGAAACATGTGTTGAGGACGCAGACCTTATTATGTGACATGCTCCTTCGAGATTCCCCTACTGGGATTGTTACTCAAAGCCCCAGCATTATGGACCTCGTAAAGTGTGACGGGGCTGCACTCTTCTACCAAGGGAAGTACTATCCAATAGGTGTGACCCCAGCTGAAGCCCAAATAAAGGATATAATGGAGTGGTTGTTGGCTAGCCATGGGGACTCGACCGGTTTGAGTACCGATAGTTTGGCCGATGCTGGGTACCTGGGGGCAGCTTCACTCGGTGACGCAGTTTGCGGAATGGCGGTTGCTTACATCACTTCTCGGGATTTCTTGTTCTGGTTTCGGTCCCACACAGCTAAAGAGGTCAAGTGGGGTGGTGCAAAGCACCATCCGGAGGACAAAGACGATGGGCAAAGAATGCACCCACGTTCTTCGTTCAAGGCTTTTCTTGAAGTGGTTAAGAGTCGGAGTTTACCATGGGAAAACGCAGAAATGGATGCAATTCATTCTTTGCAGCTTATATTACGAGACTCATTTAAGGATGCTGAGGGAAGCAATTCTAAAGCCGTTGTACAAGCTAAGGGTGGGGATTTGGAGCTGCAAGGGATTGATGAGCTGAGCTCAGTTGCAAAAGAGATGGTTAGGTTGATAGAGACAGCAACGGCTCCGATATTTGCTGTAGATGTTGAGGGCCGTGTAAATGGGTGGAATGCTAAGGTTGCAGAATTGACAGGGTTATCAGTTGAGGAAGCTATGGGGAAATCATTTGTCCATGATCTAGTTTATAAGGAATCTGAAGAAATTGTTAGCAAGCTTTTGTCTCGTGCTTTAAGAGGTGAAGAAGATAAGAATGTAGAAATAAAACTAAGAACATTTGGCTTAGAGGAGCATAGGAACGCCGTCTTTGTGGTGGTCAACGCTTGCTCTAGCAAAGATTATATGAATAACATAGTTGGAGTGTGCTTCGTCGGTCAAGATGTTACTGGTGAAAAAGTAGTAATGGACAAATTCATCCACATACAAGGCGATTATAAGGCTATAGTCCACAGTCCAAACCCTCTTATCCCCCCTATATTTGCTTCAGATGAGAACACTTGTTGCTCCGAATGGAACATGGCTATGGAAAAACTAACAGGCTGGAACAATGGAGATATAATTGGGAAAATGTTAGTTGGTGAGATTTTCGGCAGTTGTTGTCGGCTCAAGGGCCCAGATGCATTGACAAAGTTCATGATTATTTTGCATAACGCAATTGGTGGCCAAGATACGGACAAATACCCATTTTCCTTCTTTGACCACAGCGGAAAATACGTGCAAGCTCTCTTAACTGCAAATAAGAGGAGGCAACAGGAGAAGAAATGTTTTGCGAGGATGAAAGAGTTGGCCTATATTTGCCAGGAGATAAAGAATCCGTTAAGCGGTATACGGTTTACTAATTCACTCTTGGAAGGGACGGATTTGACTGATGATCAAAAGCAATGCCTCGAGACAAGTGCTGCTTGTGAGAAACAAATGTTGAAGATTATAAGGGATGCAGATTTGGAGAACATTGAGGATGGTTCTCTGGAGCTTGAGAAGGGTGAATTCTTTCTTGGAAGTGTCATAGATGCTGTCGTTAGCCAAGTAATGTTATTACTGAGGGAAAGAGGTCTACAGTTGATCCGGGATATACCAGAGGAAATTAAAACACTGGCCGCTTACGGTGATCAAGTGAGACTTCAACAGGTATTAGCCGATTTCTTGTTGAATATGGTCCGTTATGCACCATCCCCTGAAGGCTGGATAGAGATTCATGTTCGACCAAGTTTGAAGCAAATATCCGATGGAACTACCACTGTGCATGTTGAATTTAGGATTGTATGCCCCGGTGAGGGTCTTCCTCCAGAACTGGTTCAAGACATGTTCCACAGCAGTCGGTGGGTGACTCAAGAAGGGCTAGGGCTCAGCATGTCGAGGAAAATATTGAAGCTTATGAATGGCGAAGTCCAATACATGCGAGAATCAGAAAGATGCTATTTCCTTATCATCCTCCAACTTCCCATGCCCCAAAGATGCTCAAAGAGTGTTGGCTAGCCTTATCCTTATCTTGTTCAAAGCCATAAAAACTAATAGATCTTTTCTAGCCGAGAAATCACTTCTTGCACTACACTACCTTTCCATTGCACGGGACCCACAACAAGATTCGTCTTCCTTCTAAAGCCTGATGGATATTCAGTATTACTAATATTATTTCATCTTCAAGCTGTTTGGGTTGTTTGAGATATTCATACATATATGAAGAAGTTGATCATGTCTAGTTTAAGGTCCAACAAAGTTTGTGGTAATGGGGTCAGGTCGGATCTAAAAAACTCTACCACGGTGAATGCAATATTTTAAATGTTACAGTGCAAGAGGCGGTCATTCGTGGTGTTTGTACACCTGAATCTGCAAATGCTTTTGGATGGCCTCGTTCTAACCACGAATTTGTATTCTAAACTGTATTATTTGTATGTTTTCTTTGAAATTTCCAACCGTAAATGTGAAATAATTGCGTACTTTTATGTATACTCTTCCTGGAGCTGTTTTTTCGATTGGCCTCTGTAAT

Network for GWHGAAZE012295

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00360.21	PHY	25	198	2.00E-53
PF00989.26	PAS	230	345	3.50E-22
PF00989.26	PAS	361	470	2.80E-17
PF00512.26	HisKA	477	538	1.10E-09
PF02518.27	HATPase_c	586	695	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12121	PHYB	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009584	biological_process	detection of visible light
GO:0018298	biological_process	protein-chromophore linkage
GO:0000155	molecular_function	phosphorelay sensor kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.686
	SRR3591706	second leaf	26.091
	SRR3591707	mature leaf	37.259
	SRR3591708	Shoot apex	25.649
	SRR3591709	Stem	31.994
	SRR3591710	White floral bud	27.809
	SRR3591711	White flower	31.653
	SRR3591712	Green floral bud	33.185
	SRR3591713	Yellow flower	24.129
SRP173429	SRR8316895	Juvenile bud stage	21.017
	SRR8316896	Juvenile bud stage	27.386
	SRR8316897	Juvenile bud stage	10.657
	SRR8316894	Third green stage	11.387
	SRR8316900	Third green stage	25.744
	SRR8316901	Third green stage	24.085
	SRR8316898	Complete white stage	6.450
	SRR8316899	Complete white stage	32.369
	SRR8316903	Complete white stage	17.335
	SRR8316902	Silver flowering stage	12.273
	SRR8316904	Silver flowering stage	18.195
	SRR8316905	Silver flowering stage	9.674
	SRR8316906	Gold flowering stage	36.283
	SRR8316907	Gold flowering stage	33.946
	SRR8316908	Gold flowering stage	33.559
SRP132670	SRR6706286	Control	25.647
	SRR6706287	Light intensity 50%	26.332
	SRR6706288	Light intensity 20%	27.917
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.731
	CNS0095593	Slightly white alabastrum(diploid) 2	23.241
	CNS0095594	Slightly white alabastrum(diploid) 3	21.299
	CNS0095595	Whole white alabastrum(diploid) 2	19.922
	CNS0095596	Whole white alabastrum(diploid) 3	18.090
	CNS0095597	Whole white alabastrum(diploid) 4	16.989
	CNS0095598	Silvery flower (diploied) 1	28.204
	CNS0095599	Silvery flower (diploied) 2	23.556
	CNS0095600	Silvery flower (diploied) 3	32.079
	CNS0095601	Golden flower (diploid) 1	28.089
	CNS0095602	Golden flower (diploid) 2	34.469
	CNS0095603	Golden flower (diploid) 3	32.528
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.148
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.298
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.267
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.708
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.105
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.581
	CNS0095610	Silvery flower (tetraploid) 1	33.991
	CNS0095611	Silvery flower (tetraploid) 2	36.707
	CNS0095612	Silvery flower (tetraploid) 3	29.057
	CNS0095613	Golden flower (tetraploid) 1	21.807
	CNS0095614	Golden flower (tetraploid) 2	29.186
	CNS0095615	Golden flower (tetraploid) 3	34.166
CRA001975	CRR073297	Stem 1	27.841
	CRR073298	Stem 2	26.721
	CRR073299	Stem 3	26.901
	CRR073300	Leaf 1	26.751
	CRR073301	Leaf 2	23.215
	CRR073302	Leaf 3	17.081
	CRR073303	Juvenile bud 1	22.039
	CRR073304	Juvenile bud 2	15.465
	CRR073305	Juvenile bud 3	32.880
	CRR073306	Third green 1	45.001
	CRR073307	Third green 2	25.742
	CRR073308	Third green 3	32.894
	CRR073309	Second white 1	59.946
	CRR073310	Second white 2	63.251
	CRR073311	Second white 3	85.936
	CRR073312	Silver flowering 1	69.632
	CRR073313	Silver flowering 2	57.154
	CRR073314	Silver flowering 3	46.406
	CRR073315	Gold flowering 1	14.471
	CRR073316	Gold flowering 2	21.414
	CRR073317	Gold flowering 3	18.069
	CRR073318	Tawny withering 1	12.247
	CRR073319	Tawny withering 2	10.427
	CRR073320	Tawny withering 3	10.644