Gene detail

Detail information of GWHGAAZE012288

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008390523.1	1.8637E-159	PREDICTED: ubiquitin-conjugating enzyme E2 32-like [Malus domestica]
Swissprot	tr\|Q9LSP7\|UBC32_ARATH	1E-132	Ubiquitin-conjugating enzyme E2 32
trEMBL	tr\|W9RG08\|W9RG08_9ROSA	2E-158	Ubiquitin-conjugating enzyme E2 32 {ECO:0000313\|EMBL:EXB71070.1}
TAIR10	AT3G17000.1	8E-106	ubiquitin-conjugating enzyme 32

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	83083298	83088174	+
GWHAAZE00000003	mRNA	83083298	83088174	+
GWHAAZE00000003	exon	83083298	83083411	+
GWHAAZE00000003	exon	83084954	83085085	+
GWHAAZE00000003	exon	83085214	83085298	+
GWHAAZE00000003	exon	83087521	83087684	+
GWHAAZE00000003	exon	83087773	83088174	+
GWHAAZE00000003	CDS	83083298	83083411	+
GWHAAZE00000003	CDS	83084954	83085085	+
GWHAAZE00000003	CDS	83085214	83085298	+
GWHAAZE00000003	CDS	83087521	83087684	+
GWHAAZE00000003	CDS	83087773	83088174	+

Transcript Sequence
>GWHTAAZE012302 ATGTTGAATGATGACAAGTACAACCGTAAGAATCCAGCCATTAAGAGGATTCTTCAGGAGCTCAAAGAGATGCAATCTAATCCTTCCGACGACTTCATGAGCCTTCCTCTCGAGGAGAATCTATTTGAGTGGCAATTTGCAATAAGGGGACCATGTGATACTGAGTTTGAGGGTGGCATCTATCACGGACGGATTCAATTGCCTTCTGAATACCCGTTCAAACCTCCTTCATTTATGCTGTTGACACAGAATGGTCGTTTTGAAACCCAAACCAAGATATGTTTAAGCATATCAAATCATCATCCTGAGCACTGGCAGCCATCTTGGAGTGTTCGGACCGCCTTAGTAGCACTGATTGCATTTATGCCCACCAACCCAAATGGCGCATTGGGCTCACTGGACTATAAGAAGGAAGAGAGATGGGCTCTCGCAGTTAAATCCCGTGAGGCTGCCCCAAGGTTCGGCAATCCTGAACGACAAAAACTAATTGAGGAGATCCATGAATATATGATGAGCAAGGCACCCCCAGTTCCTCAGCTAACCCCTTCACTAGCTCCTGAAGATCACTCTACCAACAAAGAAGGTGAAGAATGCCAGGTGGGTCCCCCTCAAAGCACGGAAATCGATGCTGCTAGAGAAGGAATTCTAAATCCCACTGTAGATGATATCACCGAAGAACAGCAGGAAGCTCCTAGTGCTAATACTTCCCCTGAGGCATTAAGGGAGCTGAGGGAGCAGCTGCTGCAGAAGCCAGAGCTGAGGGTGGTTCAGAAACAGGCTGATGATCGCTTATTCACATGGGCTGCTGTCGGGCTTACAATTGCAATAGCCGTCCTTCTATTGAAGAAATTCATGAAAGCTAGTGGACATGGCACTGTTTTCATGGATGGATCTTGA

Network for GWHGAAZE012288

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.27	UQ_con	16	127	1.80E-20

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K10578	UBE2J1, NCUBE1, UBC6	Protein processing in endoplasmic reticulum	map04141
K10578	UBE2J1, NCUBE1, UBC6	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.220
	SRR3591706	second leaf	7.851
	SRR3591707	mature leaf	21.914
	SRR3591708	Shoot apex	6.365
	SRR3591709	Stem	23.903
	SRR3591710	White floral bud	46.595
	SRR3591711	White flower	58.612
	SRR3591712	Green floral bud	31.749
	SRR3591713	Yellow flower	65.784
SRP173429	SRR8316895	Juvenile bud stage	15.205
	SRR8316896	Juvenile bud stage	27.924
	SRR8316897	Juvenile bud stage	9.483
	SRR8316894	Third green stage	11.199
	SRR8316900	Third green stage	42.407
	SRR8316901	Third green stage	45.687
	SRR8316898	Complete white stage	33.922
	SRR8316899	Complete white stage	70.431
	SRR8316903	Complete white stage	39.099
	SRR8316902	Silver flowering stage	38.936
	SRR8316904	Silver flowering stage	43.333
	SRR8316905	Silver flowering stage	18.957
	SRR8316906	Gold flowering stage	83.519
	SRR8316907	Gold flowering stage	91.808
	SRR8316908	Gold flowering stage	74.384
SRP132670	SRR6706286	Control	58.698
	SRR6706287	Light intensity 50%	54.891
	SRR6706288	Light intensity 20%	54.934
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.924
	CNS0095593	Slightly white alabastrum(diploid) 2	27.682
	CNS0095594	Slightly white alabastrum(diploid) 3	34.675
	CNS0095595	Whole white alabastrum(diploid) 2	52.879
	CNS0095596	Whole white alabastrum(diploid) 3	53.440
	CNS0095597	Whole white alabastrum(diploid) 4	54.530
	CNS0095598	Silvery flower (diploied) 1	36.330
	CNS0095599	Silvery flower (diploied) 2	42.869
	CNS0095600	Silvery flower (diploied) 3	101.466
	CNS0095601	Golden flower (diploid) 1	42.238
	CNS0095602	Golden flower (diploid) 2	85.320
	CNS0095603	Golden flower (diploid) 3	80.557
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.687
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.641
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.627
	CNS0095607	Whole white alabastrum(tetraploid) 1	68.423
	CNS0095608	Whole white alabastrum(tetraploid) 2	75.211
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.380
	CNS0095610	Silvery flower (tetraploid) 1	103.811
	CNS0095611	Silvery flower (tetraploid) 2	115.320
	CNS0095612	Silvery flower (tetraploid) 3	111.605
	CNS0095613	Golden flower (tetraploid) 1	86.993
	CNS0095614	Golden flower (tetraploid) 2	110.993
	CNS0095615	Golden flower (tetraploid) 3	158.223
CRA001975	CRR073297	Stem 1	19.815
	CRR073298	Stem 2	18.523
	CRR073299	Stem 3	18.061
	CRR073300	Leaf 1	33.952
	CRR073301	Leaf 2	29.180
	CRR073302	Leaf 3	27.732
	CRR073303	Juvenile bud 1	44.567
	CRR073304	Juvenile bud 2	40.425
	CRR073305	Juvenile bud 3	46.019
	CRR073306	Third green 1	49.826
	CRR073307	Third green 2	48.181
	CRR073308	Third green 3	50.549
	CRR073309	Second white 1	69.969
	CRR073310	Second white 2	60.072
	CRR073311	Second white 3	54.285
	CRR073312	Silver flowering 1	60.192
	CRR073313	Silver flowering 2	65.017
	CRR073314	Silver flowering 3	45.892
	CRR073315	Gold flowering 1	21.820
	CRR073316	Gold flowering 2	17.665
	CRR073317	Gold flowering 3	23.378
	CRR073318	Tawny withering 1	24.814
	CRR073319	Tawny withering 2	26.674
	CRR073320	Tawny withering 3	20.918