Gene detail

Detail information of GWHGAAZE012273

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010052493.1	1.83102E-76	PREDICTED: transcription factor MYB12 [Eucalyptus grandis]
Swissprot	tr\|O22264\|MYB12_ARATH	9E-72	Transcription factor MYB12
trEMBL	tr\|A0A067JYL5\|A0A067JYL5_JATCU	4E-76	Uncharacterized protein {ECO:0000313\|EMBL:KDP27883.1}
TAIR10	AT2G47460.1	1E-60	myb domain protein 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82754296	82757858	-
GWHAAZE00000003	mRNA	82754296	82757858	-
GWHAAZE00000003	exon	82757726	82757858	-
GWHAAZE00000003	exon	82757495	82757624	-
GWHAAZE00000003	exon	82754296	82755019	-
GWHAAZE00000003	CDS	82757726	82757858	-
GWHAAZE00000003	CDS	82757495	82757624	-
GWHAAZE00000003	CDS	82754296	82755019	-

Transcript Sequence
>GWHTAAZE012287 ATGGGTAGAGCACCTTGTTGCGATAAAGTGGGGCTGAAGAAAGGAAGATGGACAGCTGAAGAAGATGAGACTTTGACTAAATACATTCAAGCCCATGGTGAAGGCTCTTGGAGGTCTTTACCCAAGAATGCAGGTTTGTTAAGGTGCGGAAAGAGTTGCAGACTCAGATGGATAAACTATTTGAGAGCCGACTTGAAGAGAGGGAACATCACTGCTGAAGAAGAAGATCTTATTGTGCAATTGCATAGATCCATGGGAAATAGGTGGTCTTTGATAGCTGGCCATTTACCCGGGCGAACAGATAATGAGATAAAGAATTACTGGAACTCTTATTTAAGCAGAAAAGTTAGCAGCATCTTTACGCCGACCAATCCATCACTGCCAACAAGCGCCATCAGCCCCGTCAGTCCTTCACACAAGCGTAAAGTTGGCCGAGTGAGCCGTTCAGTAGCTAGAAAGTACAACAACAAAAGCTCCCACCGACTCTTTGGTGAAATCCCAATGAGAAACTCAAATGATGCTGATCCCCAAAACTGGGCGCCGGTGCAGCCCGTGGCCACAGTAAATGAAAACCCACCAATGGGTTCAGTGCCTGTGGAGCAGAGTGAGGAGAAAGACAAGGGTGCAGTTATGTTGGGACCATTTGAAGAGATGAATGATCAGGTGATGGGACTCAACTATTTGCTGGAGGGTGGGTCTGGGGAATCAAGTGGGGTTAAGTACCTTAATGAGGAGAAAGAAAATGCACTAATGGGTGTGGACAGTAGTACAGTGATAAGTAATGATGAGAGAGAAAGTGGTGGTTGGGGGTCAAGTTGTGGGATTGGGGTGTCATTTGGGTGTTCTTCTTCTCCCATGAATGTTGCATGCTTTGGTTTTGAGTGGGATGATCAAGATCTTGCATTTTGTGATGAAGGGGAATACGCGTTGCTTTGGCCATGGGAGGAGAGTGACACTTTGGAGGTAGGAAATTTGTCTCAAGGATAA

Network for GWHGAAZE012273

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	1.30E-13
PF00249.32	Myb_DNA-binding	67	112	5.30E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.286
	SRR3591706	second leaf	33.930
	SRR3591707	mature leaf	0.147
	SRR3591708	Shoot apex	23.008
	SRR3591709	Stem	0.640
	SRR3591710	White floral bud	3.419
	SRR3591711	White flower	0.293
	SRR3591712	Green floral bud	66.970
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	15.246
	SRR8316896	Juvenile bud stage	23.164
	SRR8316897	Juvenile bud stage	10.878
	SRR8316894	Third green stage	21.169
	SRR8316900	Third green stage	118.463
	SRR8316901	Third green stage	92.531
	SRR8316898	Complete white stage	0.219
	SRR8316899	Complete white stage	20.346
	SRR8316903	Complete white stage	0.280
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.139
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.166
SRP132670	SRR6706286	Control	78.341
	SRR6706287	Light intensity 50%	85.170
	SRR6706288	Light intensity 20%	102.923
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.573
	CNS0095593	Slightly white alabastrum(diploid) 2	20.173
	CNS0095594	Slightly white alabastrum(diploid) 3	16.549
	CNS0095595	Whole white alabastrum(diploid) 2	34.572
	CNS0095596	Whole white alabastrum(diploid) 3	53.388
	CNS0095597	Whole white alabastrum(diploid) 4	26.881
	CNS0095598	Silvery flower (diploied) 1	0.298
	CNS0095599	Silvery flower (diploied) 2	0.168
	CNS0095600	Silvery flower (diploied) 3	0.233
	CNS0095601	Golden flower (diploid) 1	0.067
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.023
	CNS0095604	Slightly white alabastrum(tetraploid) 1	59.912
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.395
	CNS0095606	Slightly white alabastrum(tetraploid) 3	99.805
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.930
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.553
	CNS0095609	Whole white alabastrum(tetraploid) 3	145.921
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.280
	CNS0095612	Silvery flower (tetraploid) 3	0.098
	CNS0095613	Golden flower (tetraploid) 1	0.127
	CNS0095614	Golden flower (tetraploid) 2	0.021
	CNS0095615	Golden flower (tetraploid) 3	0.012
CRA001975	CRR073297	Stem 1	45.300
	CRR073298	Stem 2	43.735
	CRR073299	Stem 3	37.164
	CRR073300	Leaf 1	79.315
	CRR073301	Leaf 2	78.045
	CRR073302	Leaf 3	100.706
	CRR073303	Juvenile bud 1	40.495
	CRR073304	Juvenile bud 2	11.935
	CRR073305	Juvenile bud 3	17.209
	CRR073306	Third green 1	0.205
	CRR073307	Third green 2	0.173
	CRR073308	Third green 3	0.013
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.094
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.090
	CRR073316	Gold flowering 2	0.096
	CRR073317	Gold flowering 3	0.043
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.003