Gene detail

Detail information of GWHGAAZE012265

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007035713.1	0	Sensor histidine kinase, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9ZWJ9\|ARR2_ARATH	4E-179	Two-component response regulator ARR2
trEMBL	tr\|A0A061EWK1\|A0A061EWK1_THECC	0	Sensor histidine kinase, putative isoform 1 {ECO:0000313\|EMBL:EOY06639.1}
TAIR10	AT4G16110.1	8E-131	response regulator 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82681120	82685509	+
GWHAAZE00000003	mRNA	82681120	82685509	+
GWHAAZE00000003	exon	82681120	82681303	+
GWHAAZE00000003	exon	82681817	82681969	+
GWHAAZE00000003	exon	82682064	82682456	+
GWHAAZE00000003	exon	82683866	82683942	+
GWHAAZE00000003	exon	82684316	82685509	+
GWHAAZE00000003	CDS	82681120	82681303	+
GWHAAZE00000003	CDS	82681817	82681969	+
GWHAAZE00000003	CDS	82682064	82682456	+
GWHAAZE00000003	CDS	82683866	82683942	+
GWHAAZE00000003	CDS	82684316	82685509	+

Transcript Sequence
>GWHTAAZE012279 ATGAATCTGGGTAATAATCAAGGAGTGAAATCCATGTTTATGCCTAGCTCCAGTTCTGTTTCTTGGAAATCCGGCGATGGAGTTTCAGATCAGTTTCCGGCCGGTCTCCGGGTACTTGTTGTTGATGATGATCCTACTTGTCTCAAGATCTTGGAGAAAATGCTTAGGAACTGCCTTTATGATGTAACAAAAAGCAATCGAGCAGAGGATGCGTTATTTCGGTTAAGGGAGAACAAAAATGGGTTTGATATAGTTATAAGCGATGTCCACATGCCTGACATGGATGGCTTCAAACTCCTTGAGCACATTGGGCTTGAAATGGACCTGCCTGTTATCATGATGTCAGCTGATGATAGTAAGAATGTAGTGATGAAGGGCGTTACTCATGGTGCGTGTGATTATCTAATCAAGCCGGTTCGAATCGAGGCGTTGAGGAACATATGGCAGCACGTGGTTCGAAAGAAGAAGCACGAGTGGAAGGACTTTGAGCAATCGGGAAGTGCGGATAACGATGGAGGCGAACAACGGCAACAAAAGCAGCAGCCCGAAGACCCCGATTACTCGTCCTCGGCAAACGAAGGGAATTGGAGAAACTCTAAGAGAAGGAAAGAAGAGGAAGATGAAGTAGAGGACAGAGATGACACGTCTTCGTTGAAGAAGCCTCGGGTGGTTTGGTCCGTTGAACTTCATCAACAGTTTGTCGCAGCTGTTAATCAACTCGGAATTGATAAGGCTGTTCCCAAGAAAATTCTGGAATTGATGAACGTCCCGGGTCTTACACGAGAAAATGTTGCCAGTCACCTTCAGACATTTCTTCCCCACCCTTCTGTTGAAAGCACTCACAGCTGCAAGAATTTGGTGCAGAAATATCGTCTCTATCTTAGAAGACTTAGTGGAGTAACGCAGCACCACAATGGACTCGGTAACTCTTTTATGGGAACCCAAGAAACTGGGTTTGGGTCAATGTCCTCTCTCAACGGCCTCGATCTTCAAGCTCTCGCTGCCGCTGGTCAGCTCTCAACTCAAAATCTTGCTACTCTCCAAGCTAGATCTTCCATTAAATCCGCTATATCGATGCCCTTAGTTGATCAACGGAATCTATTTAGCTTCGAATCTCCAAAAAACTTCGACGGTCAAAGGCAGCAACAAAACAACAGTAACGGTAAGCAAATGGGCTTACTTCATGGGATTCCTACGAATATGGAGCCGAAGCAGCTAGCCAATTTGCACCACTCGCAGCCATTTGTGGGCATGAATATGCAAGTTGGATCACATGGAAGCCAAATGGCGTCTCAGCCGCAGCCGAGGCCCCAAATACCGTCGTCGATAGGGCAGTCCGTTTTGCCAAATGGGCTTTCGGGTGGAGTTTTGGGTCGAACTGGAATAGTTGACAATGTCTTGGGATCAGTGTACAGCCCAGGTTCCCAGTCCTCTTCAATGGTAGATTTCTCGATGAACCATAACACGGATTTGCCGGGGAATAGCTTTCCTCTTGGGGGTAATTCTGGGATTTCAAATCTCACTGCCTCTAAAGGGTTACTCCAAGAAGATGGTAACTTCGAGATGAAAGGGTCAAGAGGTGGAGTACTTCCAAGTTTCGATATATTTAGTGAGCTGCAGCAGCACAAATCCCAAGAATGGAGCTTACCCAACGTAGGAATGACCTTTGATGCCCCCCAACATGCAAATATCCCAACTACCCTTGATGTCTCACCATCAGTTTTAGTTCAACAAGGCTTTTCGTTGAACCAAAAGAGCGGGCAGAACCGGAATTCGTCTATTAACAACACGATGTTCTCAGCCAGGGGGGAAATTAGCAGTCATAGAAGTGGACCAAGCATTAGTCAACAGCATAACAACATGCTTTTAGGGGGCAATGCACCAAGGGTCAAAGCCGAAAGGTTCCATGAAACAGGCTTTCAAAATAGTTTATATCCTGAACAGTTTGGTCAGGACGACCTCATGAGTGCACTTCTCAAGCAGGTCAGCCTTTTGTTTTGA

Network for GWHGAAZE012265

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	38	146	2.10E-22
PF00249.32	Myb_DNA-binding	222	271	7.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0007165	biological_process	signal transduction
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.018
	SRR3591706	second leaf	40.756
	SRR3591707	mature leaf	38.726
	SRR3591708	Shoot apex	54.836
	SRR3591709	Stem	56.623
	SRR3591710	White floral bud	61.808
	SRR3591711	White flower	75.617
	SRR3591712	Green floral bud	58.085
	SRR3591713	Yellow flower	49.465
SRP173429	SRR8316895	Juvenile bud stage	40.158
	SRR8316896	Juvenile bud stage	39.125
	SRR8316897	Juvenile bud stage	21.962
	SRR8316894	Third green stage	17.962
	SRR8316900	Third green stage	37.669
	SRR8316901	Third green stage	38.445
	SRR8316898	Complete white stage	22.974
	SRR8316899	Complete white stage	80.247
	SRR8316903	Complete white stage	48.129
	SRR8316902	Silver flowering stage	32.014
	SRR8316904	Silver flowering stage	38.755
	SRR8316905	Silver flowering stage	15.626
	SRR8316906	Gold flowering stage	41.766
	SRR8316907	Gold flowering stage	44.952
	SRR8316908	Gold flowering stage	48.155
SRP132670	SRR6706286	Control	59.411
	SRR6706287	Light intensity 50%	67.318
	SRR6706288	Light intensity 20%	70.191
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.222
	CNS0095593	Slightly white alabastrum(diploid) 2	31.541
	CNS0095594	Slightly white alabastrum(diploid) 3	25.826
	CNS0095595	Whole white alabastrum(diploid) 2	27.429
	CNS0095596	Whole white alabastrum(diploid) 3	18.556
	CNS0095597	Whole white alabastrum(diploid) 4	21.377
	CNS0095598	Silvery flower (diploied) 1	46.168
	CNS0095599	Silvery flower (diploied) 2	30.117
	CNS0095600	Silvery flower (diploied) 3	57.340
	CNS0095601	Golden flower (diploid) 1	34.476
	CNS0095602	Golden flower (diploid) 2	57.628
	CNS0095603	Golden flower (diploid) 3	52.346
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.226
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.691
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.496
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.672
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.611
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.731
	CNS0095610	Silvery flower (tetraploid) 1	49.438
	CNS0095611	Silvery flower (tetraploid) 2	43.770
	CNS0095612	Silvery flower (tetraploid) 3	48.619
	CNS0095613	Golden flower (tetraploid) 1	19.358
	CNS0095614	Golden flower (tetraploid) 2	30.415
	CNS0095615	Golden flower (tetraploid) 3	29.908
CRA001975	CRR073297	Stem 1	94.625
	CRR073298	Stem 2	74.615
	CRR073299	Stem 3	72.842
	CRR073300	Leaf 1	69.927
	CRR073301	Leaf 2	69.008
	CRR073302	Leaf 3	48.703
	CRR073303	Juvenile bud 1	50.793
	CRR073304	Juvenile bud 2	42.784
	CRR073305	Juvenile bud 3	80.959
	CRR073306	Third green 1	33.101
	CRR073307	Third green 2	30.750
	CRR073308	Third green 3	33.607
	CRR073309	Second white 1	26.687
	CRR073310	Second white 2	30.476
	CRR073311	Second white 3	30.485
	CRR073312	Silver flowering 1	21.826
	CRR073313	Silver flowering 2	18.602
	CRR073314	Silver flowering 3	17.082
	CRR073315	Gold flowering 1	43.092
	CRR073316	Gold flowering 2	72.191
	CRR073317	Gold flowering 3	38.692
	CRR073318	Tawny withering 1	69.839
	CRR073319	Tawny withering 2	43.366
	CRR073320	Tawny withering 3	62.078