Gene detail

Detail information of GWHGAAZE012244

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009775925.1	0	PREDICTED: pectinesterase-like [Nicotiana sylvestris]
Swissprot	tr\|Q8GX86\|PME21_ARATH	1E-178	Pectinesterase 21
trEMBL	tr\|K4AWN9\|K4AWN9_SOLLC	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT3G05610.1	2E-148	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	82376082	82383820	+
GWHAAZE00000003	mRNA	82376082	82383820	+
GWHAAZE00000003	exon	82376082	82376097	+
GWHAAZE00000003	exon	82382225	82383508	+
GWHAAZE00000003	exon	82383597	82383820	+
GWHAAZE00000003	CDS	82376082	82376097	+
GWHAAZE00000003	CDS	82382225	82383508	+
GWHAAZE00000003	CDS	82383597	82383820	+

Transcript Sequence
>GWHTAAZE012258 ATGGCAGAAACTAAGGTGGCTTGTGTGGTGGCTGTAACCATTGGCGTCACCAACAAAGGCGGCAACGATGCTAAAGTCACCACCAGTAACAAAGCCGTTAATTCCGTCTGCCAACAGACCGATTACAAGGAAGCATGTATCCACAGCCTCGAGAACGAAGAAGCCGACGACCCTAAAGAGCTCGTAAAGGCCGAGTTCAAAGCCGCCATTGAAAACATAGGAGAGGCAATCAAGAACTCCGCCCCCATCAAAGAAGCCGCCAAGGACGAGAGGACTTCTAAGGCTGTCGAACTCTGCAAGCACTTATTAGATGTCTCCATTGACGATCTTCATCGATCTCTCGATAAGATTGGCAAGTTTGAGGTGAGCAAAATCGGCAGTTACCTGGACGACTTGGAGACGTGGCTCAGCGGTTCCATTGATTACCAGGAGACTTGCCTGGACGGCTTTGAGAACACCACTGGCGATGCAGGCGAGAAGATGAAGAAGCTTTTGAATGTCTCGGGCGAGTTGACCAGCAACGTTCTGGCCATGGTCTCCCAGCTTAATAAAGTTCTTGGCGACTTACAGATCCCCGGGTTGAGCAGGAAACTCCTGTCATCCGAGGGGGAGCCATTGTGGGTGGATGCCGGTCGCCGGTCTTTGCTTCAGGCGAACCCGAAACCCAACGCTGTGGTTGCTCTCGATGGATCCGGAAACTTCAAGAGCATTAACGAAGCCATCAAGACAATCCCCCCAAAGAATAAAGCCCCGTTTGTGATCCTTGTGAAGCCCGGGATTTATAAGGAGTATGTGGAGATTCCTAGGCACATGAACAACGTGGTCTTGATCGGGTCTGGTACCGACAAGACTAAGATCACCGGAAGCAAGAACTTTGCCGACGGGGTTGGCACTTACCAGACTGCAACGGTTGCCGTTAATGCAGATTTTTTCACCGCCAAGGACATTACATTCGAGAATAGTGCAGGAGCTGTAAAGCACCAGGCTGTGGCGCTCCGAGTCTCGGGCGACATGGCAATTTTCCACAACTGCCAGATGGATGCCTTCCAGGACACCCTCTACACTCACTCCTACCGCCAGTATTATCGTGACTGCACCATCTCCGGGACCATCGACTTCATCTTCGGAGATGCAGCTGTGGTGTTCCAAAATTGCAAGATGGTAGTGAGGAAGCCAGGGCCTAATCAGGCGTGCATGGTGACAGCCCAGGGCCGAAAGGACCCACGATCAAAAGGTGGTATCATCCTCCAAAACTGCACCGTAACCGGGAGAGCCAGAATTGATGAGCAGCAAGCCGCCAGATGGGCCCCGTGGAATGGAAATTTCGCGCTGGATACTCTTTACTATGCGGAGTTTGAGAACAGAGGGCCAGGTTCAAATGTAGGACAGAGAGTGAAATGGAACGGAATTAAGAAGATAAATGGAAAGGAAGCTGAATCTTACGCTCCTGGAGTCTTCATTCAAGGCGATACATGGATCAAGGCCGCTGGTGTCCCCTATGACCCTGGCATGATGAGAGTTTAA

Network for GWHGAAZE012244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	32	178	1.80E-25
PF01095.20	Pectinesterase	223	429	1.80E-90
PF01095.20	Pectinesterase	432	490	7.10E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.584
	SRR3591706	second leaf	0.309
	SRR3591707	mature leaf	0.731
	SRR3591708	Shoot apex	2.618
	SRR3591709	Stem	16.039
	SRR3591710	White floral bud	2339.059
	SRR3591711	White flower	115.411
	SRR3591712	Green floral bud	2500.073
	SRR3591713	Yellow flower	73.656
SRP173429	SRR8316895	Juvenile bud stage	451.672
	SRR8316896	Juvenile bud stage	1160.826
	SRR8316897	Juvenile bud stage	472.944
	SRR8316894	Third green stage	289.855
	SRR8316900	Third green stage	1088.182
	SRR8316901	Third green stage	1323.105
	SRR8316898	Complete white stage	1.107
	SRR8316899	Complete white stage	9.805
	SRR8316903	Complete white stage	2.093
	SRR8316902	Silver flowering stage	18.649
	SRR8316904	Silver flowering stage	33.755
	SRR8316905	Silver flowering stage	11.117
	SRR8316906	Gold flowering stage	5.498
	SRR8316907	Gold flowering stage	1.880
	SRR8316908	Gold flowering stage	2.034
SRP132670	SRR6706286	Control	739.091
	SRR6706287	Light intensity 50%	672.495
	SRR6706288	Light intensity 20%	566.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1753.466
	CNS0095593	Slightly white alabastrum(diploid) 2	1346.585
	CNS0095594	Slightly white alabastrum(diploid) 3	2188.172
	CNS0095595	Whole white alabastrum(diploid) 2	2732.417
	CNS0095596	Whole white alabastrum(diploid) 3	3369.104
	CNS0095597	Whole white alabastrum(diploid) 4	3524.402
	CNS0095598	Silvery flower (diploied) 1	78.268
	CNS0095599	Silvery flower (diploied) 2	300.408
	CNS0095600	Silvery flower (diploied) 3	64.037
	CNS0095601	Golden flower (diploid) 1	93.597
	CNS0095602	Golden flower (diploid) 2	48.003
	CNS0095603	Golden flower (diploid) 3	47.348
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3305.940
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4116.353
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.414
	CNS0095607	Whole white alabastrum(tetraploid) 1	5583.092
	CNS0095608	Whole white alabastrum(tetraploid) 2	5541.517
	CNS0095609	Whole white alabastrum(tetraploid) 3	2794.467
	CNS0095610	Silvery flower (tetraploid) 1	54.101
	CNS0095611	Silvery flower (tetraploid) 2	259.631
	CNS0095612	Silvery flower (tetraploid) 3	717.080
	CNS0095613	Golden flower (tetraploid) 1	105.546
	CNS0095614	Golden flower (tetraploid) 2	19.059
	CNS0095615	Golden flower (tetraploid) 3	316.631
CRA001975	CRR073297	Stem 1	820.844
	CRR073298	Stem 2	737.948
	CRR073299	Stem 3	518.997
	CRR073300	Leaf 1	1757.312
	CRR073301	Leaf 2	1315.560
	CRR073302	Leaf 3	786.124
	CRR073303	Juvenile bud 1	1299.890
	CRR073304	Juvenile bud 2	844.514
	CRR073305	Juvenile bud 3	116.427
	CRR073306	Third green 1	551.224
	CRR073307	Third green 2	704.208
	CRR073308	Third green 3	559.598
	CRR073309	Second white 1	23.369
	CRR073310	Second white 2	132.250
	CRR073311	Second white 3	140.367
	CRR073312	Silver flowering 1	671.573
	CRR073313	Silver flowering 2	659.977
	CRR073314	Silver flowering 3	408.976
	CRR073315	Gold flowering 1	559.257
	CRR073316	Gold flowering 2	179.856
	CRR073317	Gold flowering 3	101.787
	CRR073318	Tawny withering 1	610.335
	CRR073319	Tawny withering 2	548.777
	CRR073320	Tawny withering 3	540.197