Detail information of GWHGAAZE012167


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010320594.10PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 [Solanum lycopersicum]
Swissprottr|Q9SQT8|DHQSD_ARATH0Shikimate dehydrogenase (Precursor)
trEMBLtr|B9HSF2|B9HSF2_POPTR0Dehydroquinate dehydratase family protein {ECO:0000313|EMBL:EEF00645.1}
TAIR10AT3G06350.10dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene8114449581153069-
GWHAAZE00000003mRNA8114449581153069-
GWHAAZE00000003exon8114449581144540-
GWHAAZE00000003exon8114464181144740-
GWHAAZE00000003exon8114542681145588-
GWHAAZE00000003exon8114703881147186-
GWHAAZE00000003exon8114769681147839-
GWHAAZE00000003exon8114791981148027-
GWHAAZE00000003exon8114808581148220-
GWHAAZE00000003exon8114832781148673-
GWHAAZE00000003exon8114914581149360-
GWHAAZE00000003exon8114989381149998-
GWHAAZE00000003exon8115250081152735-
GWHAAZE00000003exon8115304781153069-
GWHAAZE00000003five_prime_UTR8115305681153069-
GWHAAZE00000003CDS8115304781153055-
GWHAAZE00000003CDS8115250081152735-
GWHAAZE00000003CDS8114989381149998-
GWHAAZE00000003CDS8114914581149360-
GWHAAZE00000003CDS8114832781148673-
GWHAAZE00000003CDS8114808581148220-
GWHAAZE00000003CDS8114791981148027-
GWHAAZE00000003CDS8114769681147839-
GWHAAZE00000003CDS8114703881147186-
GWHAAZE00000003CDS8114542681145588-
GWHAAZE00000003CDS8114464181144740-
GWHAAZE00000003CDS8114449581144540-
Transcript Sequence

Network for GWHGAAZE012167

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01487.16DHquinase_I242401.50E-69
PF08501.12Shikimate_dh_N2543308.20E-22
PF01488.21Shikimate_DH4004709.40E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13832aroDE, DHQ-SDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0003855molecular_function3-dehydroquinate dehydratase activity
GO:0004764molecular_functionshikimate 3-dehydrogenase (NADP+) activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf68.632
SRR3591706second leaf83.094
SRR3591707mature leaf18.973
SRR3591708Shoot apex82.095
SRR3591709Stem206.617
SRR3591710White floral bud28.205
SRR3591711White flower77.158
SRR3591712Green floral bud41.954
SRR3591713Yellow flower187.322
SRP173429 SRR8316895Juvenile bud stage 60.524
SRR8316896Juvenile bud stage 61.174
SRR8316897Juvenile bud stage 28.048
SRR8316894Third green stage 23.196
SRR8316900Third green stage 59.505
SRR8316901Third green stage 62.700
SRR8316898Complete white stage 16.932
SRR8316899Complete white stage 41.151
SRR8316903Complete white stage 19.951
SRR8316902Silver flowering stage35.090
SRR8316904Silver flowering stage46.600
SRR8316905Silver flowering stage22.338
SRR8316906Gold flowering stage 121.142
SRR8316907Gold flowering stage 109.871
SRR8316908Gold flowering stage 137.056
SRP132670SRR6706286Control41.467
SRR6706287Light intensity 50%52.198
SRR6706288Light intensity 20%56.659
CNP0000432CNS0095592Slightly white alabastrum(diploid) 143.059
CNS0095593Slightly white alabastrum(diploid) 236.691
CNS0095594Slightly white alabastrum(diploid) 343.892
CNS0095595Whole white alabastrum(diploid) 230.212
CNS0095596Whole white alabastrum(diploid) 327.104
CNS0095597Whole white alabastrum(diploid) 426.582
CNS0095598Silvery flower (diploied) 132.428
CNS0095599Silvery flower (diploied) 225.655
CNS0095600Silvery flower (diploied) 349.250
CNS0095601Golden flower (diploid) 125.911
CNS0095602Golden flower (diploid) 250.298
CNS0095603Golden flower (diploid) 348.145
CNS0095604Slightly white alabastrum(tetraploid) 161.640
CNS0095605Slightly white alabastrum(tetraploid) 245.854
CNS0095606Slightly white alabastrum(tetraploid) 3134.970
CNS0095607Whole white alabastrum(tetraploid) 127.936
CNS0095608Whole white alabastrum(tetraploid) 222.093
CNS0095609Whole white alabastrum(tetraploid) 389.053
CNS0095610Silvery flower (tetraploid) 196.081
CNS0095611Silvery flower (tetraploid) 255.177
CNS0095612Silvery flower (tetraploid) 350.158
CNS0095613Golden flower (tetraploid) 195.939
CNS0095614Golden flower (tetraploid) 2112.616
CNS0095615Golden flower (tetraploid) 328.270
CRA001975CRR073297Stem 161.197
CRR073298Stem 253.159
CRR073299Stem 344.417
CRR073300Leaf 152.752
CRR073301Leaf 246.813
CRR073302Leaf 346.854
CRR073303Juvenile bud 135.333
CRR073304Juvenile bud 233.712
CRR073305Juvenile bud 328.718
CRR073306Third green 173.250
CRR073307Third green 234.940
CRR073308Third green 341.968
CRR073309Second white 196.863
CRR073310Second white 2104.337
CRR073311Second white 3132.141
CRR073312Silver flowering 1161.422
CRR073313Silver flowering 2135.442
CRR073314Silver flowering 3129.040
CRR073315Gold flowering 119.963
CRR073316Gold flowering 221.049
CRR073317Gold flowering 318.514
CRR073318Tawny withering 145.131
CRR073319Tawny withering 241.891
CRR073320Tawny withering 366.568