Detail information of GWHGAAZE011894


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIS20775.10GNL1a [Nicotiana tabacum]
Swissprottr|Q42510|GNOM_ARATH0ARF guanine-nucleotide exchange factor GNOM
trEMBLtr|A0A096ZJR2|A0A096ZJR2_TOBAC0GNL1a {ECO:0000313|EMBL:AIS20775.1}
TAIR10AT1G13980.20sec7 domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene7492188574928932-
GWHAAZE00000003mRNA7492188574928932-
GWHAAZE00000003exon7492188574923235-
GWHAAZE00000003exon7492332374923392-
GWHAAZE00000003exon7492355974924588-
GWHAAZE00000003exon7492467574925340-
GWHAAZE00000003exon7492837574928932-
GWHAAZE00000003CDS7492837574928932-
GWHAAZE00000003CDS7492467574925340-
GWHAAZE00000003CDS7492355974924588-
GWHAAZE00000003CDS7492332374923392-
GWHAAZE00000003CDS7492188574923235-
Transcript Sequence

Network for GWHGAAZE011894

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0006GO:0033179 proton-transporting V-type ATPase, V0 domain GOslim:cellular_component
GO:0032012 regulation of ARF protein signal transduction GOslim:biological_process
GO:0005086 ARF guanyl-nucleotide exchange factor activity GOslim:molecular_function
GO:1902600 proton transmembrane transport GOslim:biological_process
GO:0015078 proton transmembrane transporter activity GOslim:molecular_function
map04721 Synaptic vesicle cycle
map04142 Lysosome
map04145 Phagosome
map04966 Collecting duct acid secretion


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12783.8Sec7_N2584098.80E-27
PF01369.21Sec74706522.40E-62
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18443GBF1 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0032012biological_processregulation of ARF protein signal transduction
GO:0005086molecular_functionARF guanyl-nucleotide exchange factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.968
SRR3591706second leaf1.877
SRR3591707mature leaf4.782
SRR3591708Shoot apex2.044
SRR3591709Stem3.407
SRR3591710White floral bud0.111
SRR3591711White flower0.131
SRR3591712Green floral bud0.153
SRR3591713Yellow flower0.187
SRP173429 SRR8316895Juvenile bud stage 0.618
SRR8316896Juvenile bud stage 1.025
SRR8316897Juvenile bud stage 0.658
SRR8316894Third green stage 0.611
SRR8316900Third green stage 1.018
SRR8316901Third green stage 1.089
SRR8316898Complete white stage 0.247
SRR8316899Complete white stage 1.313
SRR8316903Complete white stage 0.779
SRR8316902Silver flowering stage0.277
SRR8316904Silver flowering stage0.412
SRR8316905Silver flowering stage0.186
SRR8316906Gold flowering stage 1.191
SRR8316907Gold flowering stage 0.552
SRR8316908Gold flowering stage 1.224
SRP132670SRR6706286Control1.028
SRR6706287Light intensity 50%1.014
SRR6706288Light intensity 20%0.923
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.691
CNS0095593Slightly white alabastrum(diploid) 20.354
CNS0095594Slightly white alabastrum(diploid) 30.474
CNS0095595Whole white alabastrum(diploid) 20.454
CNS0095596Whole white alabastrum(diploid) 30.531
CNS0095597Whole white alabastrum(diploid) 40.730
CNS0095598Silvery flower (diploied) 10.609
CNS0095599Silvery flower (diploied) 20.995
CNS0095600Silvery flower (diploied) 31.408
CNS0095601Golden flower (diploid) 10.537
CNS0095602Golden flower (diploid) 21.071
CNS0095603Golden flower (diploid) 31.312
CNS0095604Slightly white alabastrum(tetraploid) 12.300
CNS0095605Slightly white alabastrum(tetraploid) 21.975
CNS0095606Slightly white alabastrum(tetraploid) 35.300
CNS0095607Whole white alabastrum(tetraploid) 11.794
CNS0095608Whole white alabastrum(tetraploid) 21.516
CNS0095609Whole white alabastrum(tetraploid) 33.922
CNS0095610Silvery flower (tetraploid) 13.995
CNS0095611Silvery flower (tetraploid) 24.775
CNS0095612Silvery flower (tetraploid) 33.700
CNS0095613Golden flower (tetraploid) 11.868
CNS0095614Golden flower (tetraploid) 23.807
CNS0095615Golden flower (tetraploid) 34.588
CRA001975CRR073297Stem 10.852
CRR073298Stem 20.661
CRR073299Stem 30.597
CRR073300Leaf 11.208
CRR073301Leaf 20.699
CRR073302Leaf 30.581
CRR073303Juvenile bud 10.718
CRR073304Juvenile bud 20.547
CRR073305Juvenile bud 30.616
CRR073306Third green 10.191
CRR073307Third green 20.391
CRR073308Third green 30.301
CRR073309Second white 10.158
CRR073310Second white 20.284
CRR073311Second white 30.167
CRR073312Silver flowering 10.283
CRR073313Silver flowering 20.189
CRR073314Silver flowering 30.218
CRR073315Gold flowering 10.161
CRR073316Gold flowering 20.601
CRR073317Gold flowering 30.420
CRR073318Tawny withering 10.505
CRR073319Tawny withering 20.079
CRR073320Tawny withering 30.235