Gene detail

Detail information of GWHGAAZE011812

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282636.1	0	PREDICTED: origin recognition complex subunit 2 [Vitis vinifera]
Swissprot	tr\|Q38899\|ORC2_ARATH	7E-175	Origin of replication complex subunit 2 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|V4URW4\|V4URW4_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR42274.1}
TAIR10	AT2G37560.1	3E-140	origin recognition complex second largest subunit 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73607503	73610149	-
GWHAAZE00000003	mRNA	73607503	73610149	-
GWHAAZE00000003	exon	73607503	73607668	-
GWHAAZE00000003	exon	73607983	73608214	-
GWHAAZE00000003	exon	73608964	73609249	-
GWHAAZE00000003	exon	73609368	73609500	-
GWHAAZE00000003	exon	73609800	73609906	-
GWHAAZE00000003	exon	73610021	73610149	-
GWHAAZE00000003	CDS	73610021	73610149	-
GWHAAZE00000003	CDS	73609800	73609906	-
GWHAAZE00000003	CDS	73609368	73609500	-
GWHAAZE00000003	CDS	73608964	73609249	-
GWHAAZE00000003	CDS	73607983	73608214	-
GWHAAZE00000003	CDS	73607503	73607668	-

Transcript Sequence
>GWHTAAZE011824 ATGGAGACAAACGAACTTGAAGAAGAGGAGTTTGGATTCTCAAGAAACTATTTTCTTGCAAAGGAGGTGGGGCCTTCTGGAAAGAAATCTGCCCACAAGCTTTCTGACATTGATCTTGTTGATGAACAGGAGCTTAGAGTGGCAGCATCTAACATTGAGCCTAAACATGAGAAAGAAATTAAGGCCTTGATGAACAGTTACAAAAGTTCATATCCTATTTGGGTTTTTGAGCTAAGGTGTGGTTTTGGTCTTCTAATGTACGGATTTGGATCCAAGAAGGCTTTGATTGAAGATTTTGCATCAACAGCCTTAACTGATTACACTGTTGTCGTAATCAATGGCTATCTTCAGTCAATCAATCTTAAACAGGTTCTGATAACATTATGTGAAGTACTCTGGGAGCAATTGAAAGTGCAGCAGAGGACTCCTTCGGTTAAAGAGAAACAACCGTTTAATACCCGATCCGTGGATGATCTTCTCACTTTTCTAGATGGACCGCACACGGAGGGAAATGATTGTTTTGTCTGTGTTATCATTCATAATATTGACGGGCCCGGGTTGCGAGACTCTGACACTCAACAGTATCTTGCAAGAATAGCAGCTTGTTCTCATATTCGCATGGTTGCCTCCATTGACCATGTAAATGCACCTCTTTTGTGGGACAAGAAGATGGTCCACACACAGTTCAACTGGTGTTGGTATCACGTTCCTACTTTTGCGCCGTACAAGGTTGAAGGAATCTTCCATCCTCTGATTCTTGCTCATGGTGGCACCACTCAAACAGTGAAGACTGCTTCAATAGTTTTACAGAGTTTGACACCCAATGCACAGAGCGTCTTCAAAGTTATTGCAGAGCATCAACTGGCACACCCTGACGAAGAAGGCAAAGAGCGGTTCCTGGTGAGTAGCCAGGTGACACTGAATTCCCATTTGACAGAATTCAAAGATCATGAACTGGTGAAGATGAGAAGGCATTCTGATGGCCAGGATTGCTTGCACATTCCTCTCGCTATAGAAGCAATTGAGAAACTGGTACTGGAGATCAGTCAATAG

Network for GWHGAAZE011812

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04084.15	ORC2	30	290	4.50E-78
PF04084.15	ORC2	296	337	4.30E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02604	ORC2	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0000808	cellular_component	origin recognition complex
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.366
	SRR3591706	second leaf	4.800
	SRR3591707	mature leaf	4.016
	SRR3591708	Shoot apex	18.212
	SRR3591709	Stem	5.127
	SRR3591710	White floral bud	8.163
	SRR3591711	White flower	7.549
	SRR3591712	Green floral bud	9.758
	SRR3591713	Yellow flower	4.725
SRP173429	SRR8316895	Juvenile bud stage	6.262
	SRR8316896	Juvenile bud stage	7.198
	SRR8316897	Juvenile bud stage	4.703
	SRR8316894	Third green stage	3.479
	SRR8316900	Third green stage	8.360
	SRR8316901	Third green stage	10.226
	SRR8316898	Complete white stage	1.957
	SRR8316899	Complete white stage	14.222
	SRR8316903	Complete white stage	3.692
	SRR8316902	Silver flowering stage	1.951
	SRR8316904	Silver flowering stage	1.970
	SRR8316905	Silver flowering stage	0.988
	SRR8316906	Gold flowering stage	2.891
	SRR8316907	Gold flowering stage	1.886
	SRR8316908	Gold flowering stage	2.569
SRP132670	SRR6706286	Control	6.484
	SRR6706287	Light intensity 50%	7.212
	SRR6706288	Light intensity 20%	8.232
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.227
	CNS0095593	Slightly white alabastrum(diploid) 2	12.705
	CNS0095594	Slightly white alabastrum(diploid) 3	8.208
	CNS0095595	Whole white alabastrum(diploid) 2	7.594
	CNS0095596	Whole white alabastrum(diploid) 3	5.438
	CNS0095597	Whole white alabastrum(diploid) 4	5.218
	CNS0095598	Silvery flower (diploied) 1	10.054
	CNS0095599	Silvery flower (diploied) 2	7.287
	CNS0095600	Silvery flower (diploied) 3	3.285
	CNS0095601	Golden flower (diploid) 1	6.099
	CNS0095602	Golden flower (diploid) 2	4.411
	CNS0095603	Golden flower (diploid) 3	3.463
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.197
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.170
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.291
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.448
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.677
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.234
	CNS0095610	Silvery flower (tetraploid) 1	2.134
	CNS0095611	Silvery flower (tetraploid) 2	3.769
	CNS0095612	Silvery flower (tetraploid) 3	3.299
	CNS0095613	Golden flower (tetraploid) 1	2.378
	CNS0095614	Golden flower (tetraploid) 2	1.987
	CNS0095615	Golden flower (tetraploid) 3	1.203
CRA001975	CRR073297	Stem 1	8.100
	CRR073298	Stem 2	7.922
	CRR073299	Stem 3	7.565
	CRR073300	Leaf 1	10.011
	CRR073301	Leaf 2	9.694
	CRR073302	Leaf 3	7.164
	CRR073303	Juvenile bud 1	7.785
	CRR073304	Juvenile bud 2	3.104
	CRR073305	Juvenile bud 3	7.922
	CRR073306	Third green 1	1.276
	CRR073307	Third green 2	1.141
	CRR073308	Third green 3	1.145
	CRR073309	Second white 1	0.862
	CRR073310	Second white 2	0.949
	CRR073311	Second white 3	0.472
	CRR073312	Silver flowering 1	0.531
	CRR073313	Silver flowering 2	0.306
	CRR073314	Silver flowering 3	0.811
	CRR073315	Gold flowering 1	8.306
	CRR073316	Gold flowering 2	5.191
	CRR073317	Gold flowering 3	5.077
	CRR073318	Tawny withering 1	7.415
	CRR073319	Tawny withering 2	12.363
	CRR073320	Tawny withering 3	11.122