Gene detail

Detail information of GWHGAAZE011797

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011081127.1	PREDICTED: primary amine oxidase-like [Sesamum indicum]
Swissprot	tr\|Q8H1H9\|AMO_ARATH	Primary amine oxidase (Precursor)
trEMBL	tr\|B9GK57\|B9GK57_POPTR	Amine oxidase {ECO:0000256\|RuleBase:RU000672}
TAIR10	AT4G12290.1	Copper amine oxidase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	73294171	73302320	-
GWHAAZE00000003	mRNA	73294171	73302320	-
GWHAAZE00000003	exon	73294171	73294438	-
GWHAAZE00000003	exon	73294528	73295075	-
GWHAAZE00000003	exon	73296353	73296466	-
GWHAAZE00000003	exon	73296760	73297936	-
GWHAAZE00000003	exon	73302313	73302320	-
GWHAAZE00000003	CDS	73302313	73302320	-
GWHAAZE00000003	CDS	73296760	73297936	-
GWHAAZE00000003	CDS	73296353	73296466	-
GWHAAZE00000003	CDS	73294528	73295075	-
GWHAAZE00000003	CDS	73294228	73294438	-
GWHAAZE00000003	three_prime_UTR	73294171	73294227	-

Transcript Sequence
>GWHTAAZE011809 ATGGGCAGGACTTCTTACTCTCTTCCAAAAATCGCTTCATCTTCAAAAACCCCCCTAACCCCACCGGCCCACCAACGACCACTCCTCCGCCGTCCCCCTCCATCCCCTCGATCCCCTCACCCTCCAAGAGCTCACCAAACTCCGCACCATCCTCAATTCCCACGCCACCTTCTCCACAGCCCCCTACGCCCTCCACTCCGCCGTCCTCGAGGACCCCGACAAGTCACGCGTCCTCTCCTGGCGCAACGGGGACCCACTCCCCCCACGCAGGCCTCCGTCATCGCACGCTCCTCCGGCCTCACCCACGTGCTCACGGTCGACCTCGATACCGGCGAGCTGACCCGGCACGAAACGGACCAACTATCCGGGTACCCCACCATGACGGTGGAGGACATGACTTCGGCCACCTGGGCCCCACTCGCCAACGCGGATTTCAACCGCACTATCCTAGCTCGTGGAATCGACTTAACGGACCTCGCGTGCTTACCGCTCTCAAGCGGGTGGTACGGATCTGACAAAAACGAGGAGAAGAGGAGGTTGATTAAGGTACAGTGCTACACCATGAAGGACACTGCCAACTTCTATATGAGGCCGATCGAAGGGCTCACAGTGCTCCTCGATCTCGACACGAAACAAGTGCTGGAGATTACCGATCAAGGGAAGAACATCCCAATACCAAAGGCTGCCGGTACAGACTATCGCTACTCCGCACAAAACACACATAACGCGAACCCGCTTAACCCGATATCCATCGAGCAACCCAAGGGTCCGAGTTTTACGGTAGAGGGGCACATGGTGAAATGGGCCAACTGGGAGTTCCACTTAAAACCCGACCCGAGAGCAGGGGTGATAATATCTCGAGTCATGTTTCGGGACCCGGGAACGGGGGAGATGAGGAATGTAATGTACAAGGGGTTTACTTCGGAGCTATTTGTGCCGTATATGGATCCGACAGATGCGTGGTACTTTAAGACGTATATGGATGCTGGGGAATACGGATTCGGGTTACAGGCGATGCCACTTGACCCGTTAAATGATTGCCCGAGGAACGCGTATTATATGGATGGTGTGTTTGCGGCTGGTGATGGAATGCCGTACGTCCGATCGAATATGATTTGTGTTTTTGAGAGTTATGCGGGTGATATCGGATGGCGACACTCTGAGAGTCCCATAACCGGCATGGAGATAAGGGAGGTGAGGCCAAAGGTGACGTTAGTCGTGAGAATGGCAGCGTCAGTCGCAAACTACGATTATATTGTGGATTGGGAGTTTCAAACCGATGGACTCATCAGAGTCAAGGTTGGACTTAGTGGCATCTTGATGGTGAAGGGCACCCCTTATGTCAACATGAACCAAGTCAACCAACAAGACAACCTCTATGGCACCCTCTTATCAGAAAATGTGATCGGCGTCATCCATGACCACTTCATCACATTCCACCTCGATTTTGACGTCGACGGCTCTGACAACTCCTTTGTGAAGGTCAATCTCCAGAGGGAACAAAACTCGCCAGACGTGTCACCCAGGCGAAGCTACTTGAAAGCAGTTAGAAATGTAGCCAAGACCGAGAAGGACGCCCAGGTCAAGCTGAAGCTCTACGACCCCTCAGAGTTCCACATCATCAACCCATCCAAAAAGACACGCGTTGGGAACCCTGTTGGGTACAAGGTGGTTCCCGGAGGCACGGCGGCTAGTTTGCTTGATCTTGATGACCCACCCCAGAAACGAGGGGCCTTTACAAATAACCAAATATGGGTGACCCCGTATAACCAGACCGAGCAATGGGCTGGTGGCTTGTTTGTTTATCAGAATGAGGGTGAAGATAATCTTGCAGTTTGGTCTGACAGGGATCGAGAAATTGAGAACAAGGACATTGTGCTTTGGTACACGTTGGGGTTCCATCACATACCATGTCAAGAGGACTTTCCGATCATGCCAACAGTATCGTCGAGCTTTGACCTAAAGCCGGTCAACTTTTTTGAGAACAACCCCATTTTAAACACGTCGCCTAATGTAGAGAAAGACCTGCCAGTATGCAAGGCTGCGGCCTCAGCTTGATGGGCGCAAAGGTTTTTCAATTTTTCTGTTGTAAAAGGCGCAGTGTATACAACCTGC

Network for GWHGAAZE011797

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02728.17	Cu_amine_oxidN3	125	226	9.50E-25
PF01179.21	Cu_amine_oxid	250	669	5.20E-138

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00276	AOC3, AOC2, tynA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycine, serine and threonine metabolism	map00260
		Tyrosine metabolism	map00350
		Phenylalanine metabolism	map00360
		beta-Alanine metabolism	map00410
		Isoquinoline alkaloid biosynthesis	map00950
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0009308	biological_process	amine metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005507	molecular_function	copper ion binding
GO:0008131	molecular_function	primary amine oxidase activity
GO:0048038	molecular_function	quinone binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.260
	SRR3591706	second leaf	13.700
	SRR3591707	mature leaf	38.738
	SRR3591708	Shoot apex	10.212
	SRR3591709	Stem	44.007
	SRR3591710	White floral bud	12.059
	SRR3591711	White flower	9.433
	SRR3591712	Green floral bud	12.884
	SRR3591713	Yellow flower	4.444
SRP173429	SRR8316895	Juvenile bud stage	12.913
	SRR8316896	Juvenile bud stage	13.784
	SRR8316897	Juvenile bud stage	4.881
	SRR8316894	Third green stage	6.559
	SRR8316900	Third green stage	20.509
	SRR8316901	Third green stage	16.108
	SRR8316898	Complete white stage	5.536
	SRR8316899	Complete white stage	50.706
	SRR8316903	Complete white stage	22.637
	SRR8316902	Silver flowering stage	9.621
	SRR8316904	Silver flowering stage	25.246
	SRR8316905	Silver flowering stage	5.168
	SRR8316906	Gold flowering stage	20.661
	SRR8316907	Gold flowering stage	18.108
	SRR8316908	Gold flowering stage	8.257
SRP132670	SRR6706286	Control	21.739
	SRR6706287	Light intensity 50%	19.324
	SRR6706288	Light intensity 20%	20.812
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.489
	CNS0095593	Slightly white alabastrum(diploid) 2	18.466
	CNS0095594	Slightly white alabastrum(diploid) 3	15.166
	CNS0095595	Whole white alabastrum(diploid) 2	19.846
	CNS0095596	Whole white alabastrum(diploid) 3	12.599
	CNS0095597	Whole white alabastrum(diploid) 4	16.020
	CNS0095598	Silvery flower (diploied) 1	29.226
	CNS0095599	Silvery flower (diploied) 2	32.098
	CNS0095600	Silvery flower (diploied) 3	46.690
	CNS0095601	Golden flower (diploid) 1	24.229
	CNS0095602	Golden flower (diploid) 2	49.943
	CNS0095603	Golden flower (diploid) 3	47.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.528
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.567
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.668
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.888
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.623
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.093
	CNS0095610	Silvery flower (tetraploid) 1	67.815
	CNS0095611	Silvery flower (tetraploid) 2	47.691
	CNS0095612	Silvery flower (tetraploid) 3	57.337
	CNS0095613	Golden flower (tetraploid) 1	9.832
	CNS0095614	Golden flower (tetraploid) 2	80.787
	CNS0095615	Golden flower (tetraploid) 3	24.428
CRA001975	CRR073297	Stem 1	17.936
	CRR073298	Stem 2	17.629
	CRR073299	Stem 3	28.470
	CRR073300	Leaf 1	31.229
	CRR073301	Leaf 2	27.666
	CRR073302	Leaf 3	23.226
	CRR073303	Juvenile bud 1	42.230
	CRR073304	Juvenile bud 2	30.916
	CRR073305	Juvenile bud 3	67.750
	CRR073306	Third green 1	43.052
	CRR073307	Third green 2	57.960
	CRR073308	Third green 3	99.204
	CRR073309	Second white 1	25.987
	CRR073310	Second white 2	29.878
	CRR073311	Second white 3	23.624
	CRR073312	Silver flowering 1	21.637
	CRR073313	Silver flowering 2	31.529
	CRR073314	Silver flowering 3	26.151
	CRR073315	Gold flowering 1	88.713
	CRR073316	Gold flowering 2	119.426
	CRR073317	Gold flowering 3	142.720
	CRR073318	Tawny withering 1	70.536
	CRR073319	Tawny withering 2	44.964
	CRR073320	Tawny withering 3	43.440