Gene detail

Detail information of GWHGAAZE011724

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009601634.1	PREDICTED: 3-ketoacyl-CoA synthase 19-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q5XEP9\|KCS17_ARATH	3-ketoacyl-CoA synthase 17
trEMBL	tr\|M1A6B6\|M1A6B6_SOLTU	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT2G26640.1	3-ketoacyl-CoA synthase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	72022508	72024967	+
GWHAAZE00000003	mRNA	72022508	72024967	+
GWHAAZE00000003	exon	72022508	72023236	+
GWHAAZE00000003	exon	72024185	72024967	+
GWHAAZE00000003	CDS	72022508	72023236	+
GWHAAZE00000003	CDS	72024185	72024967	+

Transcript Sequence
>GWHTAAZE011736 ATGGCAGATGAGAAGCTAAACTCAAAAACAGAAGGGGTTCCCTTGAAAAAAATAGATATGAAGAAGCTTAGGTACCATTACTTAATCAACAATTCCATCTATATAATTCTCATGCCATTACTCGCTATCATGTCAGTTCATATTTCAACTTGTACTCTTGAAGATTTCTTCAAGCTATGGAACCAGCTCACGCCCGACCCAGTTACAGTGGCTTTATGCTCAAGTCTTGTGGTCATTCTATCTACCTTTTACTATATTAGTCGTCCTAGAAATGTTTACTTGATAAACTACACGTGTTACAAACCCGACCCGTCTCTTATGTGTAGTAAAGAGCATCTTCTCCAGGTGTCCAAAAAATTGGGGATTTTCAGCGACGAGAGTATTCAGTTTCAGAAGAAAATTTTGGAGAGGTCAGGGTTGGGCCAGAAGGTGTATTTTCCCGAGTCCATCGTCCGGGACCCGCCAGACAAGAGTATGAATGGGGCCCGGAAGGAGGCGGAGATGGTGATGTTTGGAGCCATTAATGAGCTCTTGGCGAAAACAGGCATGAAGGCCAAGGATATTGGGATTCTCATCGTGAATTGTGGGGTGTTCAATCCAACCCCTTCTCTTTCATCGGCAGTTGTGAACAATTATAAGCTTAGGAACAATATTTTGACCTATAATCTCGGTGGGATGGGTTGCAGTGCCGGAGTAATTTCCATAGACCTAGCCAAGCAACTTTTACAGGTGAATCCAAATACCTATTGCCTGGTGGTGAGCTTGGAATGTGTAACGCTGTCTTGGTACCACGGAAACTATCGGCCAATGCTGGTCACCAATTGTATTTTCCGCATGGGTGGAGCTGCAGTACTTCTCTCAAATCGATCTTCCGATCGCCGCCGTTCAAAGTACCAACTCGCTCAAACAGTACGGACCCACAAGGGGGCCGATGACAAAGCTTACAACTGTGTGTTCCAACACGAGGATGAAATGAAGAGCATGGGCATTGCCCTTTCAAAGGATGTAACGTCAGTCGCCGGGGAGGCCTTAAAGACAAATATAAAGATGCTAGGGCCGTTGGTCCTTCCCATATCTGAGCAACTCCTATTTTTCATTAACTTAGTCGCGAGAAAGGTCCTTAAAAAGAATATCAAACCGTACATTCCAGATTTTAAGCTCGCTTTTGAGCATTTTTGTATACACGCAGGAGGGAGAGCGGTTTTGGATGCGCTAGAGAAGAGTCTTGAGCTCACCGAATGGCATATGGAACCTTCTAGGATGACTCTCTATAGGTTTGGCAATACTTCTAGTAGTTCATTATGGTATGAACTAGCTTACTCTGAGGCGAAGGGGAGGGTGAAGAAGGGAGATCGAGTTTGGCAAATTGCATTTGGGTCGGGTTTTAAGTGTAACAGTGCTGTTTGGCATGCTTTGAGGACCATTGATCCAGCTAAGGAGAAGAACCCTTGGATTGATGAGATCAATGAATTTCCTGTTCATGTCCCTGTATTGGAACGCATTGGTTTTTGA

Network for GWHGAAZE011724

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	85	373	2.60E-131
PF08541.11	ACP_syn_III_C	390	469	1.90E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.630
	SRR3591706	second leaf	2.993
	SRR3591707	mature leaf	1.261
	SRR3591708	Shoot apex	19.571
	SRR3591709	Stem	6.105
	SRR3591710	White floral bud	9.537
	SRR3591711	White flower	2.961
	SRR3591712	Green floral bud	9.993
	SRR3591713	Yellow flower	3.682
SRP173429	SRR8316895	Juvenile bud stage	16.933
	SRR8316896	Juvenile bud stage	18.568
	SRR8316897	Juvenile bud stage	6.464
	SRR8316894	Third green stage	7.336
	SRR8316900	Third green stage	22.896
	SRR8316901	Third green stage	26.827
	SRR8316898	Complete white stage	3.907
	SRR8316899	Complete white stage	31.338
	SRR8316903	Complete white stage	8.212
	SRR8316902	Silver flowering stage	3.566
	SRR8316904	Silver flowering stage	3.407
	SRR8316905	Silver flowering stage	1.355
	SRR8316906	Gold flowering stage	2.718
	SRR8316907	Gold flowering stage	3.901
	SRR8316908	Gold flowering stage	2.636
SRP132670	SRR6706286	Control	4.999
	SRR6706287	Light intensity 50%	6.547
	SRR6706288	Light intensity 20%	7.471
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	135.105
	CNS0095593	Slightly white alabastrum(diploid) 2	118.735
	CNS0095594	Slightly white alabastrum(diploid) 3	72.628
	CNS0095595	Whole white alabastrum(diploid) 2	89.025
	CNS0095596	Whole white alabastrum(diploid) 3	61.750
	CNS0095597	Whole white alabastrum(diploid) 4	58.989
	CNS0095598	Silvery flower (diploied) 1	13.813
	CNS0095599	Silvery flower (diploied) 2	33.689
	CNS0095600	Silvery flower (diploied) 3	22.779
	CNS0095601	Golden flower (diploid) 1	4.183
	CNS0095602	Golden flower (diploid) 2	4.763
	CNS0095603	Golden flower (diploid) 3	4.610
	CNS0095604	Slightly white alabastrum(tetraploid) 1	92.307
	CNS0095605	Slightly white alabastrum(tetraploid) 2	83.424
	CNS0095606	Slightly white alabastrum(tetraploid) 3	126.554
	CNS0095607	Whole white alabastrum(tetraploid) 1	75.381
	CNS0095608	Whole white alabastrum(tetraploid) 2	144.809
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.050
	CNS0095610	Silvery flower (tetraploid) 1	13.265
	CNS0095611	Silvery flower (tetraploid) 2	13.071
	CNS0095612	Silvery flower (tetraploid) 3	14.019
	CNS0095613	Golden flower (tetraploid) 1	10.904
	CNS0095614	Golden flower (tetraploid) 2	4.865
	CNS0095615	Golden flower (tetraploid) 3	0.461
CRA001975	CRR073297	Stem 1	65.126
	CRR073298	Stem 2	52.625
	CRR073299	Stem 3	12.375
	CRR073300	Leaf 1	40.264
	CRR073301	Leaf 2	54.372
	CRR073302	Leaf 3	14.409
	CRR073303	Juvenile bud 1	30.654
	CRR073304	Juvenile bud 2	6.808
	CRR073305	Juvenile bud 3	34.310
	CRR073306	Third green 1	12.592
	CRR073307	Third green 2	9.540
	CRR073308	Third green 3	10.544
	CRR073309	Second white 1	4.190
	CRR073310	Second white 2	2.608
	CRR073311	Second white 3	0.853
	CRR073312	Silver flowering 1	0.046
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.063
	CRR073315	Gold flowering 1	0.070
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.003
	CRR073320	Tawny withering 3	0.000