Gene detail

Detail information of GWHGAAZE011722

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009601634.1	PREDICTED: 3-ketoacyl-CoA synthase 19-like [Nicotiana tomentosiformis]
Swissprot	tr\|O48780\|KCS11_ARATH	3-ketoacyl-CoA synthase 11
trEMBL	tr\|K4CVT1\|K4CVT1_SOLLC	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT2G26640.1	3-ketoacyl-CoA synthase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	71995178	71997420	+
GWHAAZE00000003	mRNA	71995178	71997420	+
GWHAAZE00000003	exon	71995178	71995939	+
GWHAAZE00000003	exon	71996422	71997420	+
GWHAAZE00000003	five_prime_UTR	71995178	71995243	+
GWHAAZE00000003	CDS	71995244	71995939	+
GWHAAZE00000003	CDS	71996422	71997234	+
GWHAAZE00000003	three_prime_UTR	71997235	71997420	+

Transcript Sequence
>GWHTAAZE011734 ACCATCTTCATTATATTCCTTTGTGGAAACAAGCCAAATCAGTAACTACTCGATCAATATTGCATAATGGAATATGAGAAGAACCAAAATCAAATGAAGCTTATTTACCATTATTCAATCATATACTTTGAATATCTAATCCTCACACCACTCATCCTAGCCCTATCAATTCATCTCTCAACTTGTACTCTAGGAGATGCATTCAACCTATACAACAACCTCATGCACAACCCGATTCCACTCCTCTTGTTCGCATCTCTAACGATCATCTTATCCGTCATTTACTACATGAGCCGTCCTCGGGACGTTTACTTAGTAAATTATACAGCTTACAAGCCTAGCCCAAGTCTTATGACCACCAAGGAGCAATTTATGTTAGTTGCTACCAAATATGGATCCTTTAGCGAGGAGAGCTTAGAGTTTCAGAAGAAAATTCTTGAGAGGTCAGGTTTGGGGGATAAGACGTATTTCCCTGAAGCAGTGAAGAGAGTACCGCCGGATTATAGCTTCGGTGAGGCCACAAAAGAGGCGGAGTTGGTGATGTTTGGAGCTGTGGACGATCTCTTAGCGAAAACAAGTGTTAAGACCAAAGATATTGGGATTCTTGTGGTGAACTGTAGCAGTTTTACTGGAGTACCTTCTCTTTCAGCAGCTGTTGTGAACCGTTACAAGCTTCGTTCCGATATTGTGAGTTATACTCTTAGTGGCATGGGTTGTAGTGCTGGTGTTATTTCCGTGGACCTAGCCAAACGCCTTTTACAGGTGAGCCCAAACACTTATGCGCTACTGGTAAGCATAGAAGTATTAGGCCTCAACTGGTACCAAGGTAACAATAAACAGATGGTTCTCCCGAATTGCATTTTTCGCATGGGTGGGGCCACGGTCCTCCTTTCGAATCGATCATCTGATCGTGGTCGTTCCAAGTATCAGCTCCTCCGGACTGTGCGTACCCACAAAGGTGCAGATGATAAAAGTTACAGGTGTGTGTCTAACGAAGAGGATGAAGAGAAGTCACTCGGTCTCTCACTCACAAAAGATATCATGGCGGTTGCTGGAGAGACTTTAAAAACAAATATCACAACACTTGGGCCGCTGGTGCTTCCCATATCGGAGCAACTCCTATTTCTCACTACTTCTGTTGCAAGAAATATTTTCAAACTGAAGATCAAGCCACATGTACCTGATTTCAAACTTGCTTTTGAGCATTTTTGCATTCATTCTGGAGGGAAAGCGGTGCTGGATGAGGTAGAGAAGAACCTTGAGCTCACTAAATGGCATATGGAACCTTCTAGAATGACACTTTATAGGTATGGAAACATTTCTAGTAGTTCAATATGGTATGAGTTGGCGTATTCAGAGGCAAAGGGAAGGATCAAGAAAGGTGATAAGGTTTGGCAAATTGCATTCGGGTCCGGTTTCAAGTGTAATAGCGCTGTGTGGCGGGCTTTGCGTAATATTAATCCTGTTAATGACAAGAACCCTTGGATGGATGAGATTAATGATTTTCCCGTTGAGGTGCCTAGAGTAGACACCATCCATGTCGACCTGTCCAAACTGGAGCACTTCCATCATTGATCATATATATAGGCACTCTTGAGTCAATGATATATATATGTGTCTCATAGCCGTCATTTGATGGGCATGCCCCGATTGTGTTGTTGTGCTATACACAAGGTGCACACAAAATAGCCTTTTTTTCATTGTCGATCGGTTTAAGCGAGTCTTTATTTCTTGGAATAAATTGTTGACGATCGAATAAAC

Network for GWHGAAZE011722

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	73	361	1.20E-125
PF08541.11	ACP_syn_III_C	379	459	1.00E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.192
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.823
	SRR3591709	Stem	0.157
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.031
	SRR3591713	Yellow flower	0.073
SRP173429	SRR8316895	Juvenile bud stage	4.115
	SRR8316896	Juvenile bud stage	5.741
	SRR8316897	Juvenile bud stage	1.924
	SRR8316894	Third green stage	1.169
	SRR8316900	Third green stage	2.925
	SRR8316901	Third green stage	3.949
	SRR8316898	Complete white stage	0.343
	SRR8316899	Complete white stage	3.974
	SRR8316903	Complete white stage	0.452
	SRR8316902	Silver flowering stage	0.243
	SRR8316904	Silver flowering stage	0.017
	SRR8316905	Silver flowering stage	0.088
	SRR8316906	Gold flowering stage	0.046
	SRR8316907	Gold flowering stage	0.460
	SRR8316908	Gold flowering stage	0.356
SRP132670	SRR6706286	Control	0.323
	SRR6706287	Light intensity 50%	0.364
	SRR6706288	Light intensity 20%	0.611
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.779
	CNS0095593	Slightly white alabastrum(diploid) 2	14.873
	CNS0095594	Slightly white alabastrum(diploid) 3	13.238
	CNS0095595	Whole white alabastrum(diploid) 2	8.161
	CNS0095596	Whole white alabastrum(diploid) 3	5.760
	CNS0095597	Whole white alabastrum(diploid) 4	5.634
	CNS0095598	Silvery flower (diploied) 1	1.689
	CNS0095599	Silvery flower (diploied) 2	2.666
	CNS0095600	Silvery flower (diploied) 3	1.177
	CNS0095601	Golden flower (diploid) 1	0.856
	CNS0095602	Golden flower (diploid) 2	0.855
	CNS0095603	Golden flower (diploid) 3	0.416
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.642
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.107
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.548
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.639
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.014
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.913
	CNS0095610	Silvery flower (tetraploid) 1	1.202
	CNS0095611	Silvery flower (tetraploid) 2	0.789
	CNS0095612	Silvery flower (tetraploid) 3	0.954
	CNS0095613	Golden flower (tetraploid) 1	0.970
	CNS0095614	Golden flower (tetraploid) 2	0.371
	CNS0095615	Golden flower (tetraploid) 3	0.030
CRA001975	CRR073297	Stem 1	10.199
	CRR073298	Stem 2	9.084
	CRR073299	Stem 3	2.386
	CRR073300	Leaf 1	1.994
	CRR073301	Leaf 2	3.676
	CRR073302	Leaf 3	0.924
	CRR073303	Juvenile bud 1	1.147
	CRR073304	Juvenile bud 2	0.253
	CRR073305	Juvenile bud 3	3.157
	CRR073306	Third green 1	0.365
	CRR073307	Third green 2	0.182
	CRR073308	Third green 3	0.310
	CRR073309	Second white 1	0.138
	CRR073310	Second white 2	0.467
	CRR073311	Second white 3	0.212
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.089
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.100
	CRR073318	Tawny withering 1	0.264
	CRR073319	Tawny withering 2	0.443
	CRR073320	Tawny withering 3	0.691