Gene detail

Detail information of GWHGAAZE011503

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008460666.1	0	PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like [Cucumis melo]
Swissprot	tr\|B9SQR9\|GATB_RICCO	0	Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial {ECO:0000255\|HAMAP-Rule:MF_03147} (Precursor)
trEMBL	tr\|A0A0A0LIG1\|A0A0A0LIG1_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN61558.1}
TAIR10	AT1G48520.1	2E-164	GLU-ADT subunit B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	63938597	63948620	+
GWHAAZE00000003	mRNA	63938597	63948620	+
GWHAAZE00000003	exon	63938597	63938812	+
GWHAAZE00000003	exon	63944540	63944680	+
GWHAAZE00000003	exon	63945119	63945322	+
GWHAAZE00000003	exon	63946615	63946839	+
GWHAAZE00000003	exon	63947535	63947607	+
GWHAAZE00000003	exon	63947773	63947834	+
GWHAAZE00000003	exon	63947948	63948064	+
GWHAAZE00000003	exon	63948540	63948620	+
GWHAAZE00000003	CDS	63938597	63938812	+
GWHAAZE00000003	CDS	63944540	63944680	+
GWHAAZE00000003	CDS	63945119	63945322	+
GWHAAZE00000003	CDS	63946615	63946839	+
GWHAAZE00000003	CDS	63947535	63947607	+
GWHAAZE00000003	CDS	63947773	63947834	+
GWHAAZE00000003	CDS	63947948	63948064	+
GWHAAZE00000003	CDS	63948540	63948620	+

Transcript Sequence
>GWHTAAZE011515 ATGCAGGTTGATTTGAATAGGGCCGGGGTACCTTTGCTTGAGATTGTTTCGGAACCAGATATGAGAACTGGTATTGAAGCCGCAGAGTATGCAGCGGAATTGCAAAGGTTGGTTCGGTATTTGGGAGTTAGTAATGGGAATATGCAAGAAGGATCTCTTCGTTGTGATGTAAATGTCTCGGTTCGACCCATTGGGCAGTTACACTTTGGTACGAAGGTCGAGATAAAGAATTTGAACTCATTTTCAGCAATGAGTAGGGCCATTGATTTCGAGATTTCAAGACAGGCACTTCTTCATAGCCAAGGTCATGCTGATCAAATAGTACAAGAGACTCGTCTTTGGGAAGAGGGCGCTCAGAAAACAGTGACAATGAGAAAAAAGGAGGGACTTGCCGATTACCGCTATTTCCCTGAGCCTGACCTTCCAGAAGTTGTTCTTACAAAAGACTATGTTGATGTTATTCGTGATTCTATACCCGAACTTCCAGAAATGAAGCGCCGGAGGTACGAGAACATGGGTCTAAGCATGCAAGATGTTCTTTTTCTTGCCAATGACGGTAATGTTGCTGATTTCTTTGATGCAACTATTGCAAAAGCTGCGGATGTAAAGCTGGCTGCCAATTGGATAATGGGTGATATTGCTGCCTACATGAAAAATGAGAAATTATCAATCACTGATATTAAACTTACACCTGATGAGCTGGGCGAGTTGATAGCTTCAATAAAAAGTGGCACTATTAGTGGGAAGATTGGAAAAGAGGTAAATATATTATTTTGGTGCCAATATATACTATTTGAACTAATGGCGAAAGGAGGAACAGTCAAGGGATTAATAAAAGAAAAGGATCTAATTCAGGCAATTGAATCAATACGAAGAGAGGATCATGCTCGTGCTGTCAACTCATATGACCCAACAATTTTTATAGTAGACCCTGCTGAGATAGAGAACATGGTCGATAAAGTTATAGCAGCGAATCCAAAGCAGCTAGAGCAATACCGTGGGGGCAAAACTAAGTTACAAGGTTACTTTGCTGGCCAGATAATGAAAGAATCTAAAGGAAAGGCGAATCCGGGGCTTCTGAACAAGATCCTTTTAGAGAAATTAAATGCCAAAACCTGA

Network for GWHGAAZE011503

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02934.16	GatB_N	2	151	1.80E-53
PF02637.19	GatB_Yqey	190	287	3.20E-18
PF02637.19	GatB_Yqey	308	368	1.60E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02434	gatB, PET112	Metabolic pathways	map01100
K02434	gatB, PET112	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0016884	molecular_function	carbon-nitrogen ligase activity, with glutamine as amido-N-donor
GO:0003824	molecular_function	catalytic activity
GO:0016874	molecular_function	ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.507
	SRR3591706	second leaf	53.333
	SRR3591707	mature leaf	37.692
	SRR3591708	Shoot apex	39.277
	SRR3591709	Stem	25.482
	SRR3591710	White floral bud	17.392
	SRR3591711	White flower	10.833
	SRR3591712	Green floral bud	26.251
	SRR3591713	Yellow flower	10.718
SRP173429	SRR8316895	Juvenile bud stage	18.651
	SRR8316896	Juvenile bud stage	21.988
	SRR8316897	Juvenile bud stage	13.779
	SRR8316894	Third green stage	9.298
	SRR8316900	Third green stage	36.048
	SRR8316901	Third green stage	25.997
	SRR8316898	Complete white stage	6.282
	SRR8316899	Complete white stage	25.627
	SRR8316903	Complete white stage	10.192
	SRR8316902	Silver flowering stage	5.364
	SRR8316904	Silver flowering stage	6.118
	SRR8316905	Silver flowering stage	2.743
	SRR8316906	Gold flowering stage	10.449
	SRR8316907	Gold flowering stage	9.272
	SRR8316908	Gold flowering stage	13.710
SRP132670	SRR6706286	Control	16.086
	SRR6706287	Light intensity 50%	18.657
	SRR6706288	Light intensity 20%	19.736
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.914
	CNS0095593	Slightly white alabastrum(diploid) 2	13.882
	CNS0095594	Slightly white alabastrum(diploid) 3	16.080
	CNS0095595	Whole white alabastrum(diploid) 2	16.345
	CNS0095596	Whole white alabastrum(diploid) 3	16.150
	CNS0095597	Whole white alabastrum(diploid) 4	16.597
	CNS0095598	Silvery flower (diploied) 1	18.641
	CNS0095599	Silvery flower (diploied) 2	20.243
	CNS0095600	Silvery flower (diploied) 3	11.132
	CNS0095601	Golden flower (diploid) 1	17.096
	CNS0095602	Golden flower (diploid) 2	10.667
	CNS0095603	Golden flower (diploid) 3	9.176
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.356
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.556
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.158
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.625
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.559
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.537
	CNS0095610	Silvery flower (tetraploid) 1	14.134
	CNS0095611	Silvery flower (tetraploid) 2	14.411
	CNS0095612	Silvery flower (tetraploid) 3	15.831
	CNS0095613	Golden flower (tetraploid) 1	7.386
	CNS0095614	Golden flower (tetraploid) 2	10.714
	CNS0095615	Golden flower (tetraploid) 3	3.550
CRA001975	CRR073297	Stem 1	31.921
	CRR073298	Stem 2	26.514
	CRR073299	Stem 3	23.219
	CRR073300	Leaf 1	25.971
	CRR073301	Leaf 2	23.410
	CRR073302	Leaf 3	21.563
	CRR073303	Juvenile bud 1	24.808
	CRR073304	Juvenile bud 2	22.612
	CRR073305	Juvenile bud 3	15.847
	CRR073306	Third green 1	7.528
	CRR073307	Third green 2	3.392
	CRR073308	Third green 3	4.734
	CRR073309	Second white 1	5.828
	CRR073310	Second white 2	8.736
	CRR073311	Second white 3	4.231
	CRR073312	Silver flowering 1	3.356
	CRR073313	Silver flowering 2	4.330
	CRR073314	Silver flowering 3	2.794
	CRR073315	Gold flowering 1	32.841
	CRR073316	Gold flowering 2	59.666
	CRR073317	Gold flowering 3	28.743
	CRR073318	Tawny withering 1	14.911
	CRR073319	Tawny withering 2	16.473
	CRR073320	Tawny withering 3	19.093