Gene detail

Detail information of GWHGAAZE011314

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99431.1	6.93434E-77	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q949S5\|P2B11_ARATH	9E-61	F-box protein PP2-B11
trEMBL	tr\|A0A068TT44\|A0A068TT44_COFCA	3E-77	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO99431.1}
TAIR10	AT1G80110.1	2E-50	phloem protein 2-B11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	56831826	56836010	+
GWHAAZE00000003	mRNA	56831826	56836010	+
GWHAAZE00000003	exon	56831826	56832095	+
GWHAAZE00000003	exon	56833892	56834007	+
GWHAAZE00000003	exon	56835608	56836010	+
GWHAAZE00000003	CDS	56831826	56832095	+
GWHAAZE00000003	CDS	56833892	56834007	+
GWHAAZE00000003	CDS	56835608	56836010	+

Transcript Sequence
>GWHTAAZE011326 ATAAAAATGGTGCCGAGTATTTCGAAGTTGCCGGAGGGCTGCATTTCAGATATTCTATCGCGGACTTCGCCTTGGGATGTGTGCAGATCATCAGCGATCTCAACGGGATTCAAATCAGCTGCCAATTCTGATGCCGTGTGGCACCGGTTCCTGCCGTCCGATTACCCCGAGATCCTTGCACGATCGGATTCTCCTGTGGTGTGCACCACCAAAAAACAGCTCTATTTCCTCCTCTGCGACTCCCTTATTCTCCTTGATGGTGGCAAATTGAGATTCATGCTAGATAAAAGGAGTGGGAAGAAATGTTATATGATACCAAAAGGGAGCTCTCAATTGCGTGGAAGGATGATGACATATCGGAATTGGCCATCTATATCCGAATCAAGATTTACAGAGGTGGCCAACCTTCGGTTCGTTTGCTGGCTAGATATTTCTGGTAAGATTCAAACTCGAATGCTATCGCCGGTGACTAACTATGTAGCATACCTTGTGTACAAAGTGTCCCCAAGTATCCGCGATCACATCGGCCCGGTAAAGGTATCAGTTAGATTTCTAGGGGATGAAGTGGAACCCGAGATCGCTGTTGTTAATCTGAAACAACATGGGAACATAAGAACAGACAGTTGGATGGAGATTGAACTTGGCGAGTTTTTCAGTGATCATGGTGATGGTGGTGAAGTGGAGATGCAATTAAAGGAGACGGAGATTCTTAATGGGAAGTATGGCTTAATTGTTGAAGGCATTGAAGTTCGGCCAAAAGAGACGGTTGCTGTTAGAGACAACCATTAA

Network for GWHGAAZE011314

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	50	3.20E-06
PF14299.7	PP2	100	252	5.10E-36

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.717
	SRR3591706	second leaf	0.240
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.087
	SRR3591709	Stem	0.482
	SRR3591710	White floral bud	0.830
	SRR3591711	White flower	0.276
	SRR3591712	Green floral bud	0.870
	SRR3591713	Yellow flower	0.130
SRP173429	SRR8316895	Juvenile bud stage	0.175
	SRR8316896	Juvenile bud stage	0.617
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.186
	SRR8316900	Third green stage	0.184
	SRR8316901	Third green stage	0.461
	SRR8316898	Complete white stage	0.267
	SRR8316899	Complete white stage	0.892
	SRR8316903	Complete white stage	0.137
	SRR8316902	Silver flowering stage	1.879
	SRR8316904	Silver flowering stage	1.192
	SRR8316905	Silver flowering stage	0.522
	SRR8316906	Gold flowering stage	9.215
	SRR8316907	Gold flowering stage	2.742
	SRR8316908	Gold flowering stage	1.907
SRP132670	SRR6706286	Control	0.215
	SRR6706287	Light intensity 50%	0.222
	SRR6706288	Light intensity 20%	0.192
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.961
	CNS0095593	Slightly white alabastrum(diploid) 2	1.609
	CNS0095594	Slightly white alabastrum(diploid) 3	0.448
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.016
	CNS0095597	Whole white alabastrum(diploid) 4	0.070
	CNS0095598	Silvery flower (diploied) 1	0.589
	CNS0095599	Silvery flower (diploied) 2	0.870
	CNS0095600	Silvery flower (diploied) 3	2.964
	CNS0095601	Golden flower (diploid) 1	2.544
	CNS0095602	Golden flower (diploid) 2	9.711
	CNS0095603	Golden flower (diploid) 3	10.772
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.086
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.088
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.113
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.033
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.437
	CNS0095613	Golden flower (tetraploid) 1	0.148
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.100
	CRR073299	Stem 3	0.071
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.052
	CRR073302	Leaf 3	0.075
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.068
	CRR073305	Juvenile bud 3	0.058
	CRR073306	Third green 1	0.744
	CRR073307	Third green 2	1.264
	CRR073308	Third green 3	0.660
	CRR073309	Second white 1	7.173
	CRR073310	Second white 2	9.018
	CRR073311	Second white 3	6.339
	CRR073312	Silver flowering 1	19.047
	CRR073313	Silver flowering 2	24.686
	CRR073314	Silver flowering 3	18.442
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.076
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.136