Gene detail

Detail information of GWHGAAZE011281

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002278561.2	PREDICTED: uncharacterized protein LOC100243949 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|F6GSK7\|F6GSK7_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43280.1}
TAIR10	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	55484170	55487732	+
GWHAAZE00000003	mRNA	55484170	55487732	+
GWHAAZE00000003	exon	55484170	55484877	+
GWHAAZE00000003	exon	55484967	55486116	+
GWHAAZE00000003	exon	55486316	55486912	+
GWHAAZE00000003	exon	55487428	55487732	+
GWHAAZE00000003	CDS	55484170	55484877	+
GWHAAZE00000003	CDS	55484967	55486116	+
GWHAAZE00000003	CDS	55486316	55486912	+
GWHAAZE00000003	CDS	55487428	55487732	+

Transcript Sequence
>GWHTAAZE011293 ATGGCATCCATAACCAAGGCTATGATCTTCATTTTACTCTCAGTACTTTTTATCATATCGTTCCTTTCACCAAATGTTGCATCTACTGCTTCTCGAAAAGAAGCAACGGCTCTCCTTCAATGGAAATCAAGCCTTCTCAGCCAAAACAACTCCATGCAAACTTCATGGACTCTTCCACCTGATAATGCCACCAATTCTTCTCCACATTCCAAAAAAAACCTGAGCCCGTGTTCTTGGCTCGGAGTTTCTTGCATCGAAGGAAGCGTAATCCGATTAAACCTCTCGATGACAGGGTTAAAAGGTACACTTTACAACTTTTCCTTCTTGTCCTTCCCAAATCTCACGTACATTGATCTTGGCCGGAATGAACTCAATGGTACCATTCCACCAGAGATTGGTACACTATCAAAACTCAAGTATCTTGATTTGTCGTCCAATCTTTTTTCGGGTATCATCCCACCAGAGATTTGTCTTTTGAGGAATCTCGAAACCCTTCATTTGGTTGAAAATCAACTCACAGGCTTGATTCCTCAAGAGATAGGCCAACTAAATTCTCTCTCCGAGCTAGCATTGTTCACAAACTTTCTTGAAGGACCTATTCCTTCTTCTATAGGCAATTTGAGCAACTTGACTTCCCTATATCTCTCTGAGAATAAACTTTCAGGTTATATTCCACCGGAAATGGGAAATCTTGTCAACCTTCTTGTGTTATGGGGTCCCATTCCCCCAGAAATAGGGACGTTGAATTATCTCGAGCAACTCAGCATTCACACAAACAATCTTACTGGCTCAATCCCTCCATCTTTGGGCAGTCTGTCCTCCCTGAGTCTTCTTCATCTCTACACTAATAAACTGTCAGGTCCCATTCCAGAAGAACTAGGAAATTTGGAGTCCATAACCGATCTCGAATTAAGCCAGAATCGACTTAGTGGTTCAATTCCTACTTCCCTTGGCAAGTTGAATAACCTGAAAATTTTGTTCCTCCGCGAGAACAACCTTTCGGGTCGCATCCCCCGAGAACTAGGAAACTTGAAACTAGAAGTCCTAGAAATAGACACAAATCAATTATCCGGCTCCTTACCAAACCAGATTTGCCACGGTGGAAAGCTTGAAAAGTTCACCGTGAACGACAACCAACTCACTGGTCACATACCCAAAAGCTTTAGAAACTGCCAAAGTTTATCTAGAGTCCGCTTCGACGGTAACAAGCTCACAGGAAATATATCTGAAGCTTTTGGCATATACCCGAACTTACAGTTCATGGATATAAGCAACAATGAATTTTACGGGGAGATTTCAGATAATTGGAGTAGATGCAAACAGTTATCAAAGTTGGCAATCGCAAAGAACAATCTCACCGGTAGTATACCAGTGGCGTTTAGAAATGCTACTCAACTACGTGAACTTGATCTTTCTTCAAATCATTTAGTTGGTGAGATTCCTAAGGAATTTGGGAAACTAAAGTATTTACTGAAGTTGGTTTTGAATGATAACCAACTTTCTGGCTTTGCACCTCGAGAACTCAGGTCACTAAGCGAGTTATTATATCTTGATCTATCAGCGAATAGATTAAGTGGGCTTATACCAGGAGTTCTTGGGGACTGCTCGCATCTGACATATTTGAATTTAAGTAAAAATGAATTTGGCGGGGAAATTCCAATTCAGATCACAAAGTTAATACAGCTGTCCGAGCTCGACTTGAGCCATAACTCGCTCTCGGGAGTAATTCCATCTCAATTTGGAAGTTTTGAGAGTAATTTGGTGTATGTTGACATATCCTACAATGAGTTGGAGGGTCCATTACCGAACAATAAAGCTTTTATGGATGCTTCCATAGAAAAATTACAAGGAAACCGAGGTAAAGAAGATGAAGATATGTTCTCAATGCCGGCGTATGATGGAAGATTAATGTATGATGAAATCGTAACATCTACAAAAGATTTCGACGTCCAATATTGCATTGGAAAGGGAGGATCTGGAAGTGTTTACAAAGCTCTATTGCCTTCAGGTAATATTGTAGCTGTGAAGAAGCTTCATTCGATATCGGATATGATTGATCGAGAAAGCTTTATAAACGAGGTAAGAGTTTTGACTGAGATAAAGCATCGAAACATTGTGAAGCTTTATGGGTTTTGTTCGCATGCTCGGCACTCATTTTTGATATATGAGTACCTTGAAAGAGGTAGCTTGGCATCAATATTGAGCAACGACAAAGAGGCTAAGCAGCTGGATTGGACCAAAAGGATAAATTTTATTAAGGGGGTGGCACATGCTTTATGCTATATGCACCATGATTGTGCAACGCCAATTGTTCATCGAGACATATCGAGTAAGAACATATTGCTTGATTCTGGGTACGAGGCTAGTCTTTCGGATTTTGGGACTGCTAAGTTTTTAAAGCCGGACTCGTCCAATTGGAGCATGCTTGCAGGCACTTATGGATATGTTGCACCAGAGTTTGCTTACACGATGAATGTAACTGAGAAGTGCGATGTGTATAGTTTTGGAGTGTTGGCACTAGAAGTGATCAAAGGGAAGTATCCTGGTGACTTGATTGATACTGTATTATCTTCACCGATCGAGAAGATACAGCTGAATGATGTGGTGGACCAACGACTCCCATTTTCCTCGTTCGGAGTTAAGGAGGTGGTGGTATCTATCATAATAATGGCGAAAGCGTGTCTACATGCCGATCCACAATCAAGGCCAACAATGTATATCGTTTCTCAGTTATTATCAACTCGAACAACAGGTCTCTAA

Network for GWHGAAZE011281

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	34	84	3.70E-05
PF00560.34	LRR_1	137	157	0.61
PF00560.34	LRR_1	465	487	0.26
PF13855.7	LRR_8	490	547	6.50E-09
PF00560.34	LRR_1	562	582	1.5
PF00069.26	Pkinase	653	905	2.60E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.579
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.209
	SRR3591711	White flower	0.201
	SRR3591712	Green floral bud	0.222
	SRR3591713	Yellow flower	0.223
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.091
	SRR8316900	Third green stage	0.032
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.085
	SRR8316899	Complete white stage	0.079
	SRR8316903	Complete white stage	0.073
	SRR8316902	Silver flowering stage	0.250
	SRR8316904	Silver flowering stage	0.392
	SRR8316905	Silver flowering stage	0.234
	SRR8316906	Gold flowering stage	0.639
	SRR8316907	Gold flowering stage	0.143
	SRR8316908	Gold flowering stage	1.029
SRP132670	SRR6706286	Control	0.188
	SRR6706287	Light intensity 50%	0.126
	SRR6706288	Light intensity 20%	0.055
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.020
	CNS0095593	Slightly white alabastrum(diploid) 2	0.115
	CNS0095594	Slightly white alabastrum(diploid) 3	0.031
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.097
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.046
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.008
	CNS0095603	Golden flower (diploid) 3	0.039
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.074
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.023
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.020
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.009
	CNS0095610	Silvery flower (tetraploid) 1	0.073
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.120
	CNS0095613	Golden flower (tetraploid) 1	0.018
	CNS0095614	Golden flower (tetraploid) 2	0.064
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.033
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.021
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.038
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.155
	CRR073319	Tawny withering 2	0.495
	CRR073320	Tawny withering 3	0.000