Gene detail

Detail information of GWHGAAZE011244

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010659133.1	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|K7K0X1\|K7K0X1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA0090S00350.1}
TAIR10	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	54583775	54588776	+
GWHAAZE00000003	mRNA	54583775	54588776	+
GWHAAZE00000003	exon	54583775	54583925	+
GWHAAZE00000003	exon	54584176	54584937	+
GWHAAZE00000003	exon	54585031	54588027	+
GWHAAZE00000003	exon	54588472	54588776	+
GWHAAZE00000003	CDS	54583775	54583925	+
GWHAAZE00000003	CDS	54584176	54584937	+
GWHAAZE00000003	CDS	54585031	54588027	+
GWHAAZE00000003	CDS	54588472	54588776	+

Transcript Sequence
>GWHTAAZE011256 ATGCAATCCCCTTGGTCTCTTTTTCCTCATAAATCCACAAATTCTTCTTCAAATCAAAACACAAGTGTGAGTCCATGCACTTGGTTCGGAGTCTCTTGCAATAGTGAAGGAAGCATAAGTCAATTGAACCTTTCGCATTCTAATGTAAAAGCAACTTGGCTCATTTGCATCTATACAAAAACAAGCTTTCAAGTACAATTCCTCCCGAAAATCGGGAATCTCACCAATCTTGTTGAGATCGACTTAACCGAGAACCTTCTATTTGGTTCCATTCCATCATGTTTCGGGAACTTGAATAACCTAACCTTGCTCCAGCTATTCAGTAACCAGTTAACTGGCTTGATTCCCCCGAAACTAGGGAACTTGAAATTACTTGAAACACTAGATCTTGACACAAATAGTCTTTCTGGATCAATTCCACCATCGTTTCGTGATCTCAAATCCTTGAGTTATCTATCATTGGGAACCAATCAGCTTTCAGGTTCAATTCCCTCTTTTGTTAGCAATTTGAGCAACTTGGCTCATTTGTATCTATACGAAAACAAGCTTTCGGGTACAATTCCTCCCGAAATCGGGAATCTCACCAATCTTGTTGAGATCGACTTAAGCGAAAACCTTCTATTTGGTTATATTCCATCATGTTTCGGGAACTTGAAATTACTCGAAAGACTAGATCTTGACACAAATAGTCTTTCTGGATCAATTCCACCATCGTTAGCTGATCTCAAATCCTTGAGTTATCTATCTTTGCATATCAATCAACTTTCCGATTCAATTCCCTCTTTTGTTGGTAATTTGAGCAACTTGGCTCATTTGTATCTATACAAAAATAAGCTTTCGGGTACAATTCCTCCCGAAATCGGGAATCTCACCAATCTTGTTGAGATCGACTTAAGCGAGAACCTTCTATTTGGGAACTTGAAATTACTTGAAACACTAGATCTTGACACAAATAGTCTTTCTGGATCAATTCCACCATCGTTTCGTGATCTCAAATCCTTGAGTTATCTATCATTGGGAAGCAATCAGCTTTCAGGTTCAATTCCCTCTTTTGTTAGCAATTTGAGCAACTTGGCTCATTTGTATCTATACGAAAACAAGCTTTCGGGTACAATTCCTCCCGAAATCGGGAATCTCGCCAATCTTGTTGAGATCGACTTTAGAGAGAACCTTCTATTTGGTTCCATTCCATCATGTTTCGGGAACTTGAAATTACTCAAAAGACTAGATCTTGACACAAATAGTCTTTCTGGATCAATTCCACCATCGTTTTGTGATCTCAAATCCTTGAGTTATCTATCATTGGAAACCAATCAGCTTTCGGGTTCAATTCCCTCTTTTGTTGGCAATTTGAGCAACTTGGCTCATTTGTATCTATACGAAAACAAGCTTTCGGGTACAATTCCTCCCGAAATCGGGAATCTCGCCAATCTTGTTGAGATCGACTTAAGAGAGAACCTTCTATTTGGTTCCATTCCATCATGTTTCGGGAACTTGAAATTACTCGAAAGACTAGATCTTGACACAAATAGTCTTTCTGGATCAATTCCACCATCGTTTCGTGATCTCAAATCCTTGAGTTATCTATCATTGGAAACTAATCAGCTTTCGGGTTCAATTCCCTCTTTTGTTGGCAATTTAAGCAATTTGGCTCATTTGTATCTATACGAAAACAAGTTTTCGGGTACAATTCCTCCCGAAATCGGGAATCTCGCCAATCTTGTTGAGATTGACTTAAGAGAGAACCTTCTATTTGGTTCCATTCCATCATGTTTCGGGAACTTGAAATTACTCGAAAGACTAGATCTTGACACAAATAGTCTTTCTGGATCAATTCCACCATCGTTTCGTGATCTCAAATCCTTGAGTTATCTATCATTGGAAACTAATCAGCTTTCGGGTTCAATTCCCTCTTTTGTTGGCAATTTGAGCAACTTGGTTTATTTGTATCTATCCAAAAACAAGCTTTCGGGTACAATTCCTCCTGAAATCGGGAATCTCACAAATCTTGTTGAGATTGGCTTAATAGATAACCTTCTATTTGGATCCATTCCATCAAGTTTCGGGAACTTGCGTAACCTAACTTGGTTGGCCATTCATGTAAATAATCTTTCTGGTCATATTCCTCCTTCACTTGGCAACCTCACCAATTTAGAAAGTTTGTTGCTTCGTGACAACCAACTTTCAGGTACCATCCCGCAACAATTGGATAGGCTTGAATTAGTTGAACTAGAAATAGATACTAATAGTCTCTCCGGTTATCTTTCAGAAGAGATATGTAATGGCGGAAAACTTCAAAACTTGACTGTTAACCACAACAATTTTGTTGGTCCAATTCCCAAAAGCTTGAGAAACTGCTCGAGCTTAGTTAGAGTCCGCCTCGAGGGTAACCACTTCACCGGAAACATATCTGAAGTTTTCGGTATCTATCCAAACTTACAATTGATGTATTTAAGTGACAATAATCTGTACGGTCATCTTTCTAATAGTTGGAGCAAGTGTAAAAAATTAACAGACTTTCAAATTGCGAGGAACAATATCACTGGTGGCATACCATTAGAATTTGGTAGTTCGAATCTCGTTGTGCTTGATATTTCATCAAATAATTTAGTTGGAGAGATTCCAAAGGAGTTTTGTAAATTGACCCATATGTTGAAGTTATTTTTGAGCGATAACCAACTTTTTGGAAATATTCCTCAAGAACTCGGATCCTTAACTGAGTTGTTGGTACTCGATTTGTCTAAAAACATATTAAGTGGGTCCATACCATCAAATCTTTCAAATTGCTTGAAACTGTTTAATTTGAGCTTGAGTGACAATAATCTTAGCCAAGATATTCCAGTGGAGCTGACAAATTTATTCCACTTATCGAGTCTCGATTTGAGTGGGAACTCACTAACAGGGGAGATTCCATCTCAAATCAGACATTTGCAGAGTTTGGAGAACTTGAATCTTTCTTGCAATAAACTCTCTGGTGAAATTCCAAATGCTTTTGATGATATGAATGCTTTGATATATATTGACATATCATATAACGAGCTTTATGGTCCTATCCCAAATAGCAAAGTTTTTGTGAATGTGTCAATACAAGTATTACGAGGGAATAAAGGTTTGTGTGGCAATGTTAAAGGATTGCAGCATTGCGCAAATTCTTCTGTGGTGTCACAGCATAAACATAAAATTAACCATAAACTTGTTCTTGTAGTCGCACTCCCTCTCATTGTATCCCTTTTACTTCTGTGTGCCTTCGTGTTATTCTTCGTCATCTATGACCAAAGAAGAAGAAGAAGAAAGTCAAAAGCAGAGGAAAAGGATGCGCAAGATCAAGATATATTTTCGATATTAAGTTTCGATGGAAGGGCAATGTACAAAGAAATCTTGAAGGCCACAAATGATTTTGATTTCCAATATTGCATTGGACAAGGAGGATTCGGAGTTGTTTACAAAGCGGAAATGCAATCGGGTAATGTTGTTGCTGTGAAAAAACTTCACTCATTATCGGAAATAGTTGACCGTAAAGCTTTTGAGAATGAGGTAAAAGCATTGACAGAAATAAGGCACCGAAACATTGTGAAGCTTCATGGATTTTGTTCACATGCTCAAAATTCATTTTTAGTTTATGATTACCTCGAAAGAGGTAGCTTAGCCGAAATCTTGAGCAAAGAAGAAGAAGCACAAAAGTTGGATTGGAAAAAAAGGGTGAACATTATAAAGGGAGTTGCTCATGCTTTGTCTTACATGCACCATGATTGTTCTCCCCCAATTATTCATCGAGACATATCGAGCAAGAATGTTTTGCTTGATTCTGAGTATGAAGCTTGTGTTTCAGATTTTGGTACTGCTAAGATTTTAAAGCTAGATACATCAAACTGGAGTGCACTCGCCGGAACGTATGGATATGTTGCACCAGAGTTTGCTTACGCAATGAAGGTAACGGAAAAGTTTGATGTGTATAGCTTTGGAGTGCTATCATTGGAAGTGATTAGAGGAAAGCATCCGGGTAATTATATTGTTTCATTGTTATCTCAATCAAGTGAAGACAATCAACTTAAATATGTGTTAGATGAACGACTTCCACCTCCTTCACTTGACGAAGATAAACTATTGCTATCCATCATAATAATAGCAAAAGCATGTTTGCATGATAATCCTCAATCAAGGCCGAAAATGAACATCGTTTCTCAGACACTATCAGTCAAAATGCCTACTTCTTAA

Network for GWHGAAZE011244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	196	255	4.70E-07
PF13855.7	LRR_8	381	440	2.90E-07
PF13855.7	LRR_8	477	536	2.40E-08
PF13855.7	LRR_8	573	632	2.40E-08
PF00560.34	LRR_1	859	881	1.5
PF13855.7	LRR_8	955	1014	1.50E-10
PF07714.18	PK_Tyr_Ser-Thr	1136	1396	1.10E-43

Protein Sequence

>GWHPAAZE011250
MQSPWSLFPHKSTNSSSNQNTSVSPCTWFGVSCNSEGSISQLNLSHSNVKATWLICIYTKTSFQVQFLPKIGNLTNLVEIDLTENLLFGSIPSCFGNLNNLTLLQLFSNQLTGLIPPKLGNLKLLETLDLDTNSLSGSIPPSFRDLKSLSYLSLGTNQLSGSIPSFVSNLSNLAHLYLYENKLSGTIPPEIGNLTNLVEIDLSENLLFGYIPSCFGNLKLLERLDLDTNSLSGSIPPSLADLKSLSYLSLHINQLSDSIPSFVGNLSNLAHLYLYKNKLSGTIPPEIGNLTNLVEIDLSENLLFGNLKLLETLDLDTNSLSGSIPPSFRDLKSLSYLSLGSNQLSGSIPSFVSNLSNLAHLYLYENKLSGTIPPEIGNLANLVEIDFRENLLFGSIPSCFGNLKLLKRLDLDTNSLSGSIPPSFCDLKSLSYLSLETNQLSGSIPSFVGNLSNLAHLYLYENKLSGTIPPEIGNLANLVEIDLRENLLFGSIPSCFGNLKLLERLDLDTNSLSGSIPPSFRDLKSLSYLSLETNQLSGSIPSFVGNLSNLAHLYLYENKFSGTIPPEIGNLANLVEIDLRENLLFGSIPSCFGNLKLLERLDLDTNSLSGSIPPSFRDLKSLSYLSLETNQLSGSIPSFVGNLSNLVYLYLSKNKLSGTIPPEIGNLTNLVEIGLIDNLLFGSIPSSFGNLRNLTWLAIHVNNLSGHIPPSLGNLTNLESLLLRDNQLSGTIPQQLDRLELVELEIDTNSLSGYLSEEICNGGKLQNLTVNHNNFVGPIPKSLRNCSSLVRVRLEGNHFTGNISEVFGIYPNLQLMYLSDNNLYGHLSNSWSKCKKLTDFQIARNNITGGIPLEFGSSNLVVLDISSNNLVGEIPKEFCKLTHMLKLFLSDNQLFGNIPQELGSLTELLVLDLSKNILSGSIPSNLSNCLKLFNLSLSDNNLSQDIPVELTNLFHLSSLDLSGNSLTGEIPSQIRHLQSLENLNLSCNKLSGEIPNAFDDMNALIYIDISYNELYGPIPNSKVFVNVSIQVLRGNKGLCGNVKGLQHCANSSVVSQHKHKINHKLVLVVALPLIVSLLLLCAFVLFFVIYDQRRRRRKSKAEEKDAQDQDIFSILSFDGRAMYKEILKATNDFDFQYCIGQGGFGVVYKAEMQSGNVVAVKKLHSLSEIVDRKAFENEVKALTEIRHRNIVKLHGFCSHAQNSFLVYDYLERGSLAEILSKEEEAQKLDWKKRVNIIKGVAHALSYMHHDCSPPIIHRDISSKNVLLDSEYEACVSDFGTAKILKLDTSNWSALAGTYGYVAPEFAYAMKVTEKFDVYSFGVLSLEVIRGKHPGNYIVSLLSQSSEDNQLKYVLDERLPPPSLDEDKLLLSIIIIAKACLHDNPQSRPKMNIVSQTLSVKMPTS

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.030
	SRR3591706	second leaf	0.482
	SRR3591707	mature leaf	12.856
	SRR3591708	Shoot apex	0.064
	SRR3591709	Stem	1.398
	SRR3591710	White floral bud	0.150
	SRR3591711	White flower	0.494
	SRR3591712	Green floral bud	0.131
	SRR3591713	Yellow flower	0.179
SRP173429	SRR8316895	Juvenile bud stage	0.041
	SRR8316896	Juvenile bud stage	0.417
	SRR8316897	Juvenile bud stage	0.206
	SRR8316894	Third green stage	0.144
	SRR8316900	Third green stage	0.073
	SRR8316901	Third green stage	0.100
	SRR8316898	Complete white stage	0.055
	SRR8316899	Complete white stage	0.715
	SRR8316903	Complete white stage	0.059
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.051
	SRR8316905	Silver flowering stage	0.010
	SRR8316906	Gold flowering stage	0.036
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.072
SRP132670	SRR6706286	Control	0.102
	SRR6706287	Light intensity 50%	0.075
	SRR6706288	Light intensity 20%	0.064
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.042
	CNS0095593	Slightly white alabastrum(diploid) 2	0.061
	CNS0095594	Slightly white alabastrum(diploid) 3	0.144
	CNS0095595	Whole white alabastrum(diploid) 2	0.097
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.073
	CNS0095598	Silvery flower (diploied) 1	0.582
	CNS0095599	Silvery flower (diploied) 2	0.139
	CNS0095600	Silvery flower (diploied) 3	0.052
	CNS0095601	Golden flower (diploid) 1	0.064
	CNS0095602	Golden flower (diploid) 2	0.099
	CNS0095603	Golden flower (diploid) 3	0.154
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.278
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.048
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.794
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.085
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.023
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.147
	CNS0095610	Silvery flower (tetraploid) 1	0.040
	CNS0095611	Silvery flower (tetraploid) 2	0.124
	CNS0095612	Silvery flower (tetraploid) 3	0.079
	CNS0095613	Golden flower (tetraploid) 1	0.029
	CNS0095614	Golden flower (tetraploid) 2	0.093
	CNS0095615	Golden flower (tetraploid) 3	0.015
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.009
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.011
	CRR073301	Leaf 2	0.018
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.450
	CRR073316	Gold flowering 2	2.533
	CRR073317	Gold flowering 3	0.316
	CRR073318	Tawny withering 1	0.163
	CRR073319	Tawny withering 2	0.212
	CRR073320	Tawny withering 3	0.290