Gene detail

Detail information of GWHGAAZE011241

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP18619.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|A0A068VDH9\|A0A068VDH9_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_259 {ECO:0000313\|EMBL:CDP18619.1}
TAIR10	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	54503924	54507394	+
GWHAAZE00000003	mRNA	54503924	54507394	+
GWHAAZE00000003	exon	54503924	54506735	+
GWHAAZE00000003	exon	54507090	54507394	+
GWHAAZE00000003	CDS	54503924	54506735	+
GWHAAZE00000003	CDS	54507090	54507394	+

Transcript Sequence
>GWHTAAZE011253 ATGCAATCCTCCTGGTCTCTTCTTCCTCATGAATCCACAAATTCTTCTTCAAATCAAAAAACAAGTGTGAGTCCATGCACTTGGTTCGGAGTCTCTTGCAATAGTGAAGGAAGCGTAAATCGATTGAACCTTTCGCAGTCTAATGTAAAAGGTACACTTTACGACCTTTCTTTCAAATCGTTCCCCAATCTGGAGTGCATTGACCTCTACAAAAATGAACTTTTTGGTACTATCCCACCTCAAATAGGTTCCCTCTCTAAAATTGTATTTCTCATTTTGGCTTCTAATAATTTTATTGGTATAATCCCACCTGAAATATGCTTGCTCACTAGTCTTGAAGTCCTTAATTTGTTTCAAAATCAACTAAATGGGTCAATTCCTCATGACATAGGTAGATTAAAGTCCCTTAATGGCCTCGCATTGTTTACCAATAATCTTGAAGGTCCAATTCCCTCTTCTATTTCCAATTTGAGCAACTTGTCTTATTTATATCTATACACAAATAAGCTCTCGGGTACTATTCCTCCCAAAATTGGGAATCTCACCAATCTTGTAAAGCTCGACTTGACCGAGAACCTTATATATGGTTCCATTCCGTCAAGTTTCGGGAACTTGAAATTACTCGAGAGTCTGGGACTTTCCTCCAACAATATTTCTGGATCAATTCCACCATCGTTAGGCAATCTCAAATCCTTAAGTGGGCTATTTTTGGACACCAATCAACTTTCGGGTTCGATTCCTTCTTCTATTGGCAATCTGAGCAACTTGGCTATTCTATATCTCTATAAAAATAAGCTCTCGGGTACCATTCCTCCCGAAATCGGGAATCTCACCAATCTTGTAAAGCTCGACTTGACCGAGAACCTTCTATATGGTTCCATTCCGTCAAGTTTTGGGAACTTGAAATTACTCGAGAGTCTGGCACTTTTCACCAACAATCTTTCTGGATCAATTCCACCATCGTTAGGCAATCTCAAATCCTTGAGTGAGCTAACTTTGTACACCAATCAGCTTTCGAGTTCGATTCCCTCTTCTATTGGCAATTTGAGCAACTTGGCTATTCTATATCTCTATAAAAATAAGCTCTCGGGTACCATTCCTCTCGAAATGGGGAATCTCACCAATCTTGTAAAGATTGACTTAAGTGAGAACCTTCTATTTGGTTCTATTCCATCAAGTTTTGGGAACTTGAGTTACCTGATCGGGCTTATCCTATTCAATAACCAGTTAACTGGCTTGAAAAGCTTGAAAAACTGCTCAAGGTTAACCAGAGTCCGCCTCGAAGGAAACCAATTCACTGGAAACATATCAGAAGTTTTCGGCATTTATCCAAACTTGAATTTGATGTATTTAAGTGACAACAACTTTTATGGCCATCTTTCTAATAATTGGAGTAAGTGTAAAAAGTTAACAAACTTTCAAATTGCGAAGAACAATATCAGTGGTGGCATACCGTCCGAATTTGGTAGTTCGAATTTCGTTGTACTTGATATTTCGTCAAATAATTTAGTTGGGGAGATTCCAAAGGAGTTCAGTAAATTGAAGCATATGTTGAGGTTATTGTTAAGCAATAACCAACTTTTTGGCAATATTCCACAAGAAATCGGATCCTTAACTGAGTTATTGGAACTAGATTTGTCCAAAAATAGATTAAATGGGTCCATACCAACAAATCTTTCAAATTGCTTAAATATGTTTAGTTTGAGCTTGAGTGAAAATAATCTTAGCCAAGATATTCCAGTGGAGGTAATGAAGTTATCTCACTTGTCTACTCTCGATTTGAGTAAGAATTCACTCACAGGGGAGATTCCATCTCAAATCACAAGTTTGCAGAGTTTGGAGAAGTTAAATCTTTCTTACAATAAACTCTCGGGTGAAATTCCAAATGCTTTTGATGATATGATTGCTTTGTTATATATTGACATATCCTACAATGAGCTTTATGGTCCTATCCCAAATAGTAGAGTTTTTGCTAATGCTTCAATACAAGTATTGCGGGGGAATAAAGGTTTGTGTGGTAATGTTAAAGGATTGCAGCATTGTGCAAATCCTTATGCGGTGTCAAAGCATAAACAAAAAATGAGCCATAAACTTGTTCTCGTAGTTTCACTCCCTCTCATTGTATCCTTTTTACTTCTTTGTGCCTTCGTTTTATTTGTCATCATCTTTGACCGAAGAAGAAGAAGAAGAAGAAAGTCAAAAGCAGAGGAAATGGATGCACAAGATCAAGATATATTGTCGATATTAAGTTTCGATGGAAGGGCAATGTATAAAGAAATCTTGAAGGCCACAAATGATTTTGATTTCCAGTATTGTATTGGGCAAGGAGGATCCGGAGTTGTTTACAAAGCGAAAATGCAATCGGGTAATGTTGTAGCTGTGAAGAAAATTCACACATTATCGAAAATAGTTGACCATAAAGCTTTTGAGAATGAGGTAAAAGCATTGACAAAAATAAGGCACAGAAACATTGTGAAGCTTCATGGATTTTGCTCACATGCTCGAAATTCGTTTTTGGTTTATGACTACATTGAAAGAGGTAGCTTAGTAGAAATCTTAAGCAAAGAAGAAGAAGCAAGGAAATTGGATTGGCAAAAAAGGGTGAACATTATTAAGGGAGTCGCTTATGCTTTGTCTTACATGCACCATGATTGTTCTCCTCCAATTGTTCATCGAGACATATCGAGCAAGAATATTTTGCTTGATTCCGAGTATGAGGCTTGTGTTTCAGATTTTGGTACTGCTAAGATTTTAAAGCTAGATTCATCAAACTGGAGTGCACTCGCTGGAACGTATGGATATGTTGCACCAGAGTTTGCTTACACAATGAAGATAACCGAAAAGTGTGATGTGTATAGCTTTGGAGTACTATCATTGGAAGTGCTTAGAGGAAAGCATCCGGGTGATTACATTGCTTCACTGTTATCTCAATCAAGTGAAGACAATCAACTTAAAGATGTGTTGGATGAACGACTTCCACCTCCTTCACTTGAAGAAGAGAAGCTATTGCTATCCATCATAATACTAGCAAAAGCATGTTTGCATGATAATCCTCAATCAAGGCCGACAATGCACATCGTTTCTCAGTCACTATCAGTCAAAACACCTAGTTCTTAG

Network for GWHGAAZE011241

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	183	242	1.10E-06
PF13855.7	LRR_8	587	647	1.30E-10
PF00069.26	Pkinase	772	1027	2.20E-45

Protein Sequence

>GWHPAAZE011247
MQSSWSLLPHESTNSSSNQKTSVSPCTWFGVSCNSEGSVNRLNLSQSNVKGTLYDLSFKSFPNLECIDLYKNELFGTIPPQIGSLSKIVFLILASNNFIGIIPPEICLLTSLEVLNLFQNQLNGSIPHDIGRLKSLNGLALFTNNLEGPIPSSISNLSNLSYLYLYTNKLSGTIPPKIGNLTNLVKLDLTENLIYGSIPSSFGNLKLLESLGLSSNNISGSIPPSLGNLKSLSGLFLDTNQLSGSIPSSIGNLSNLAILYLYKNKLSGTIPPEIGNLTNLVKLDLTENLLYGSIPSSFGNLKLLESLALFTNNLSGSIPPSLGNLKSLSELTLYTNQLSSSIPSSIGNLSNLAILYLYKNKLSGTIPLEMGNLTNLVKIDLSENLLFGSIPSSFGNLSYLIGLILFNNQLTGLKSLKNCSRLTRVRLEGNQFTGNISEVFGIYPNLNLMYLSDNNFYGHLSNNWSKCKKLTNFQIAKNNISGGIPSEFGSSNFVVLDISSNNLVGEIPKEFSKLKHMLRLLLSNNQLFGNIPQEIGSLTELLELDLSKNRLNGSIPTNLSNCLNMFSLSLSENNLSQDIPVEVMKLSHLSTLDLSKNSLTGEIPSQITSLQSLEKLNLSYNKLSGEIPNAFDDMIALLYIDISYNELYGPIPNSRVFANASIQVLRGNKGLCGNVKGLQHCANPYAVSKHKQKMSHKLVLVVSLPLIVSFLLLCAFVLFVIIFDRRRRRRRKSKAEEMDAQDQDILSILSFDGRAMYKEILKATNDFDFQYCIGQGGSGVVYKAKMQSGNVVAVKKIHTLSKIVDHKAFENEVKALTKIRHRNIVKLHGFCSHARNSFLVYDYIERGSLVEILSKEEEARKLDWQKRVNIIKGVAYALSYMHHDCSPPIVHRDISSKNILLDSEYEACVSDFGTAKILKLDSSNWSALAGTYGYVAPEFAYTMKITEKCDVYSFGVLSLEVLRGKHPGDYIASLLSQSSEDNQLKDVLDERLPPPSLEEEKLLLSIIILAKACLHDNPQSRPTMHIVSQSLSVKTPSS

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.804
	SRR3591706	second leaf	2.171
	SRR3591707	mature leaf	45.847
	SRR3591708	Shoot apex	0.256
	SRR3591709	Stem	5.815
	SRR3591710	White floral bud	1.899
	SRR3591711	White flower	2.187
	SRR3591712	Green floral bud	2.280
	SRR3591713	Yellow flower	0.445
SRP173429	SRR8316895	Juvenile bud stage	3.948
	SRR8316896	Juvenile bud stage	7.762
	SRR8316897	Juvenile bud stage	4.445
	SRR8316894	Third green stage	4.958
	SRR8316900	Third green stage	6.237
	SRR8316901	Third green stage	6.664
	SRR8316898	Complete white stage	0.740
	SRR8316899	Complete white stage	13.858
	SRR8316903	Complete white stage	1.768
	SRR8316902	Silver flowering stage	1.157
	SRR8316904	Silver flowering stage	1.562
	SRR8316905	Silver flowering stage	0.396
	SRR8316906	Gold flowering stage	0.808
	SRR8316907	Gold flowering stage	0.286
	SRR8316908	Gold flowering stage	1.380
SRP132670	SRR6706286	Control	0.427
	SRR6706287	Light intensity 50%	0.570
	SRR6706288	Light intensity 20%	0.690
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.855
	CNS0095593	Slightly white alabastrum(diploid) 2	1.243
	CNS0095594	Slightly white alabastrum(diploid) 3	3.328
	CNS0095595	Whole white alabastrum(diploid) 2	1.119
	CNS0095596	Whole white alabastrum(diploid) 3	0.540
	CNS0095597	Whole white alabastrum(diploid) 4	1.780
	CNS0095598	Silvery flower (diploied) 1	5.949
	CNS0095599	Silvery flower (diploied) 2	2.352
	CNS0095600	Silvery flower (diploied) 3	1.366
	CNS0095601	Golden flower (diploid) 1	1.233
	CNS0095602	Golden flower (diploid) 2	1.559
	CNS0095603	Golden flower (diploid) 3	1.642
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.118
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.406
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.703
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.882
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.225
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.117
	CNS0095610	Silvery flower (tetraploid) 1	0.717
	CNS0095611	Silvery flower (tetraploid) 2	0.296
	CNS0095612	Silvery flower (tetraploid) 3	0.178
	CNS0095613	Golden flower (tetraploid) 1	0.049
	CNS0095614	Golden flower (tetraploid) 2	0.232
	CNS0095615	Golden flower (tetraploid) 3	0.135
CRA001975	CRR073297	Stem 1	2.402
	CRR073298	Stem 2	2.530
	CRR073299	Stem 3	0.319
	CRR073300	Leaf 1	3.324
	CRR073301	Leaf 2	2.985
	CRR073302	Leaf 3	0.691
	CRR073303	Juvenile bud 1	0.170
	CRR073304	Juvenile bud 2	0.109
	CRR073305	Juvenile bud 3	0.420
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.919
	CRR073316	Gold flowering 2	8.551
	CRR073317	Gold flowering 3	2.058
	CRR073318	Tawny withering 1	1.539
	CRR073319	Tawny withering 2	1.247
	CRR073320	Tawny withering 3	0.680