Gene detail

Detail information of GWHGAAZE011234

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010278985.1	PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Nelumbo nucifera]
Swissprot	tr\|Q84XA3\|IMDH_VIGUN	Inosine-5'-monophosphate dehydrogenase {ECO:0000255\|HAMAP-Rule:MF_03156}
trEMBL	tr\|L0BUM6\|L0BUM6_CAMSI	Inosine-5'-monophosphate dehydrogenase {ECO:0000256\|HAMAP-Rule:MF_03156}
TAIR10	AT1G16350.1	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	54313378	54317203	+
GWHAAZE00000003	mRNA	54313378	54317203	+
GWHAAZE00000003	exon	54313378	54314376	+
GWHAAZE00000003	exon	54314815	54314994	+
GWHAAZE00000003	exon	54315249	54315332	+
GWHAAZE00000003	exon	54316615	54316872	+
GWHAAZE00000003	exon	54317060	54317203	+
GWHAAZE00000003	CDS	54313378	54314376	+
GWHAAZE00000003	CDS	54314815	54314994	+
GWHAAZE00000003	CDS	54315249	54315332	+
GWHAAZE00000003	CDS	54316615	54316872	+
GWHAAZE00000003	CDS	54317060	54317131	+
GWHAAZE00000003	three_prime_UTR	54317132	54317203	+

Transcript Sequence
>GWHTAAZE011246 ATGGTCGGACAACCTCCAATAGACGACGGATTTCAAGCAGTTAAACTCTTCAACCAGGGCTACTCGTACACGTATGACGACATCATCCTCCTCCCTCACTATATTGACTTCCCAACTGAAGCTGTCCAACTCGGCACCAAACTTACCCGCAACATCAACCTCTCAATCCCTTGCGTTGCTTCTCCAATGGACACTGTTACCGAGTCATCGATGGCTGTATCCATGGCTGCCTTAGGCGGTATCGGGATCGTCCACTCTAACAACACCCCCTCCGAGCAGGCTGCCATTATTCGTTCTGCGAAGTCTCACCGAATCCCCTTTGTATACGATCCCATTTTCTTATCACCTTCTGAATCGATTAATTCCGTTGACAATTTCTGTTCCTCACCATGCATTTTCGTCACTGAGTCGGGGTCCAAAACGTCGAAGCTGTTAGGTTTTGTGCGCAAGTCTGATTGGGAGGCCTTAAATGACAAGGATGCTAGAGTTTCTGATTATATGGTGAAGTCTCCAGTATCGTTGCCTTCGAGCTATGACTTTGAGAAAGTTGCTGGCTATTTAGCATCGAAGAATCTTGACTTTGTGCCATTGGTGAACGAGAAAGATGGGGAAGTCGTGGGTGTATTGACGGCAACCGATGTTCAGAGGATTCGAGGATTGCCAAAAGCTGGATTGCCTTCACTGGGACCGGATGGGGATTTTTTGGTAGGTGCTGCCATAGGGACGAGAGAATCGGATAAGGGGAGGCTGGAAGAGTTGGTGAAGGCGGGAGCCAATGTCATTGTGCTTGATAGTTCTCAGGGGAATTCAATTTATCAGATTGAGATGATTAAGTACGTGAAGAACATGTATCCTCAGTTGGATGTGATTGGTGGAAATGTTGTGACGATGTATCAAGCGCAGAATTTGATTCAGGCCGGAGCTGATGCGTTGAGAGTTGGGATGGGGTCTGGTTCCATTTGTACCACACAGGAGGTCTGTGCTGTGGGTCGTGGTCAGGCGACCGCTGTTTACAAGGTGTCATCCATTGCTCAGCAAAGTGGTGTGCCTGTAATTGCTGATGGTGGCATTTCAAATTCTGGGCACATTGTCAAAGCTTTGGTTTTGGGGGCATCGACGGTGATGATGGGAAGCTTCTTAGCTGGCAGCAGTGAAGCCCCTGGAGCATATGAATATCAGTCCATAAAAAGCATTTCTGTTAAAAGATGGAAGGTAGGTAGGGAAAGCACAAAGGCGCAAAGTGCCGTACTGTCTGCAATGGAAGGTGGGCTTAGGGTGAAAAAATATAGAGGAATGGGATCCCTAGAAGCAATGACAAAGGGGAGTGACGCTCGATACCTGGGTGATAAAGCTAAGCTGAAGATAGCACAGGGGGTTGTTGGAGCAGTTGCGGATAAAGGTTCTGTCATGGAGTTTGTACCTTACACGTTGCAAGCTGTTAGGCAGGGGCTGCAGGATCTTGGTGCTAGCTCCCTCCAATCTGCTCATGACCTGTTAGGGTCTGGGGTACTGAGGCTTGAGGTTCGAACTGGAGCAGCCCAAGTTGAAGGTGGAGTTCATGGGCTGGTTTCTTATGTGAAGAAATCATTTTGATATCTTATATTGAAGTCCGATGCTGTGTTTTAGCTGGTGCACAATTTTCAAAAGCCATCTTCTAGTATGGGA

Network for GWHGAAZE011234

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00478.26	IMPDH	23	403	7.90E-98
PF00571.29	CBS	163	215	1.10E-05
PF00478.26	IMPDH	420	520	1.80E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00088	IMPDH, guaB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006164	biological_process	purine nucleotide biosynthetic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0003938	molecular_function	IMP dehydrogenase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	75.973
	SRR3591706	second leaf	39.322
	SRR3591707	mature leaf	35.689
	SRR3591708	Shoot apex	69.569
	SRR3591709	Stem	51.237
	SRR3591710	White floral bud	54.212
	SRR3591711	White flower	74.307
	SRR3591712	Green floral bud	76.715
	SRR3591713	Yellow flower	63.480
SRP173429	SRR8316895	Juvenile bud stage	37.772
	SRR8316896	Juvenile bud stage	50.428
	SRR8316897	Juvenile bud stage	26.973
	SRR8316894	Third green stage	19.396
	SRR8316900	Third green stage	74.976
	SRR8316901	Third green stage	60.628
	SRR8316898	Complete white stage	18.609
	SRR8316899	Complete white stage	61.070
	SRR8316903	Complete white stage	28.699
	SRR8316902	Silver flowering stage	24.226
	SRR8316904	Silver flowering stage	30.284
	SRR8316905	Silver flowering stage	17.955
	SRR8316906	Gold flowering stage	54.570
	SRR8316907	Gold flowering stage	58.982
	SRR8316908	Gold flowering stage	63.288
SRP132670	SRR6706286	Control	108.949
	SRR6706287	Light intensity 50%	99.544
	SRR6706288	Light intensity 20%	100.243
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.000
	CNS0095593	Slightly white alabastrum(diploid) 2	45.362
	CNS0095594	Slightly white alabastrum(diploid) 3	39.408
	CNS0095595	Whole white alabastrum(diploid) 2	44.679
	CNS0095596	Whole white alabastrum(diploid) 3	52.210
	CNS0095597	Whole white alabastrum(diploid) 4	40.136
	CNS0095598	Silvery flower (diploied) 1	44.881
	CNS0095599	Silvery flower (diploied) 2	38.927
	CNS0095600	Silvery flower (diploied) 3	59.762
	CNS0095601	Golden flower (diploid) 1	43.832
	CNS0095602	Golden flower (diploid) 2	55.803
	CNS0095603	Golden flower (diploid) 3	53.043
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.464
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.331
	CNS0095606	Slightly white alabastrum(tetraploid) 3	76.079
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.402
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.241
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.995
	CNS0095610	Silvery flower (tetraploid) 1	51.079
	CNS0095611	Silvery flower (tetraploid) 2	60.529
	CNS0095612	Silvery flower (tetraploid) 3	49.892
	CNS0095613	Golden flower (tetraploid) 1	30.593
	CNS0095614	Golden flower (tetraploid) 2	54.033
	CNS0095615	Golden flower (tetraploid) 3	38.933
CRA001975	CRR073297	Stem 1	72.993
	CRR073298	Stem 2	76.435
	CRR073299	Stem 3	81.318
	CRR073300	Leaf 1	82.661
	CRR073301	Leaf 2	78.770
	CRR073302	Leaf 3	93.500
	CRR073303	Juvenile bud 1	90.565
	CRR073304	Juvenile bud 2	74.960
	CRR073305	Juvenile bud 3	98.910
	CRR073306	Third green 1	40.727
	CRR073307	Third green 2	29.329
	CRR073308	Third green 3	35.397
	CRR073309	Second white 1	61.560
	CRR073310	Second white 2	36.694
	CRR073311	Second white 3	38.298
	CRR073312	Silver flowering 1	47.875
	CRR073313	Silver flowering 2	55.776
	CRR073314	Silver flowering 3	47.625
	CRR073315	Gold flowering 1	26.422
	CRR073316	Gold flowering 2	35.519
	CRR073317	Gold flowering 3	41.201
	CRR073318	Tawny withering 1	47.617
	CRR073319	Tawny withering 2	37.273
	CRR073320	Tawny withering 3	45.530