Gene detail

Detail information of GWHGAAZE011206

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663893.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	6E-161	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A5AGK9\|A5AGK9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68996.1}
TAIR10	AT4G08850.1	4E-125	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	53022706	53024489	-
GWHAAZE00000003	mRNA	53022706	53024489	-
GWHAAZE00000003	exon	53022706	53023010	-
GWHAAZE00000003	exon	53023367	53024489	-
GWHAAZE00000003	CDS	53023367	53024489	-
GWHAAZE00000003	CDS	53022706	53023010	-

Transcript Sequence
>GWHTAAZE011218 ATGTTTAGTTTGAGCTTGAGTGAAAATAATCTTAGCCAAGATATTCCAGTGGAGATGATGAAGTTATCTCACTTGTCTACTCTAGATTTGAGTAAGAATTCACTCACAGGGGAGATTCCATCTCAAATCACAAGTTTGCAGAGTTTGGAGAAGTTAAATCTTTCTTGCAATAAACTCTCGGGTGAAATTCCAAATGCTTTTGATGATATGATTGCTTCGTTATATATTGACATATCCTACAATGAGCTTTATGGTCCTATCCCAAATAGCAGAGTTTTTGCAAATGCGTCAATACAAGTATTGCGAGGGAATAAAGGTTTGTGTGGTAATGTTAAAGGATTGCAGCATTGTGGAAATCCTTCTGCGGTGTCAAAGCATAAACAAAAAATGAGCCATAAACTTGTTCTCGTAGTTGTACTCCCTCTCATTGTATCCGTTTTACTTCTTTGTGCCTTCGTTTTGTTCGTCATCATCTTTGACCGAAGAAGAAGAAGAAGAAGAAGAAAGTCAAAAGCAGAGGAAAAGGATGCACAAGATCAAGATATATTTTCGATATTAAGTTTCGATGGAAGGGCAATGTATAAAGAAATCTTGAAGGCCACAAATGATTTTGATTTCCAGTATTGTATTGGACAAGGAGGATCTGGAGTTGTTTACAAAGCGGAAATGCAATCAGGTAATGTTGTAGCTGTGAAGAAACTTCACACATTATCAGAAATAGTTGACCATAAAGCTTTTGAGAATGAGGTAAAAGCATTGACAGAAATAAAGCACCGAAACATTGTGAAGCTTCATGGATTTTGCTCACATGCTCGAAATTCGTTTTTGGTTTATGAGTACATTGAAAGAGGTAGCTTAGTAGATATCTTAAGCAAAGAAGAAGAAGCAAGGAAATTGGATTGGCAAAAAAGGGTGAACATTATTAAGGGAGTCGTTTTTGCTTTGTCTTACATGCACCATGATTGTTCTCCTCCAATTGTTCATCGAGACATATCGAGCAAGAATATTTTGCTTGATTCCGAGTATGAGGCTTGTGTTTCAGATTTTGGTACTGCTAAGATTTTAAAGCTAGATTCATCAAATTGGAGTGCACTCGTCGGAACGTATGGATATGTTGCACCAGAGTTTGCTTACACAATGAAGGTAACCGAAAAGTGTGATGTGTATAGCTTGGGAGTACTATCATTGGAAGTGCTTAGAGGAAAGCATCCGGGTGATTACATTGCTTCGCTGTTATCTCAATCAAGTGAAGACATTCAACTTAAAGATGCATTGGATGAACGACTTCCACCTCCTTCACTTGAAGAGGAGAAACTATTGCTATCCATCATAATACTAGCAAAAGCATGTTTGCATGATAATCCTCAATCAAGGCCGACAATGCACATCATTTCTCAGACGCTATCAGTCAAAACACCTACTTCTTAG

Network for GWHGAAZE011206

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	23	83	3.10E-09
PF00069.26	Pkinase	209	465	1.30E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.194
	SRR3591707	mature leaf	1.357
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.359
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.180
	SRR3591712	Green floral bud	0.038
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.462
	SRR8316896	Juvenile bud stage	0.093
	SRR8316897	Juvenile bud stage	0.038
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.048
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.849
	SRR8316903	Complete white stage	0.322
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.096
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.184
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.019
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.189
	CNS0095593	Slightly white alabastrum(diploid) 2	0.646
	CNS0095594	Slightly white alabastrum(diploid) 3	0.247
	CNS0095595	Whole white alabastrum(diploid) 2	0.654
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.444
	CNS0095598	Silvery flower (diploied) 1	3.709
	CNS0095599	Silvery flower (diploied) 2	0.785
	CNS0095600	Silvery flower (diploied) 3	0.301
	CNS0095601	Golden flower (diploid) 1	1.428
	CNS0095602	Golden flower (diploid) 2	1.595
	CNS0095603	Golden flower (diploid) 3	1.608
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.358
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.306
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.557
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.630
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.295
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.036
	CNS0095610	Silvery flower (tetraploid) 1	0.893
	CNS0095611	Silvery flower (tetraploid) 2	0.979
	CNS0095612	Silvery flower (tetraploid) 3	0.263
	CNS0095613	Golden flower (tetraploid) 1	0.067
	CNS0095614	Golden flower (tetraploid) 2	5.197
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.005
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.034
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.058
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.042
	CRR073316	Gold flowering 2	0.041
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.452
	CRR073319	Tawny withering 2	4.099
	CRR073320	Tawny withering 3	3.514