Gene detail

Detail information of GWHGAAZE011201

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006306695.1	0	hypothetical protein CARUB_v10008216mg [Capsella rubella]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	8E-169	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|R0IQT0\|R0IQT0_9BRAS	0	Uncharacterized protein {ECO:0000313\|EMBL:EOA39593.1}
TAIR10	AT4G08850.1	4E-121	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	52802143	52805690	-
GWHAAZE00000003	mRNA	52802143	52805690	-
GWHAAZE00000003	exon	52803673	52805690	-
GWHAAZE00000003	exon	52802850	52803208	-
GWHAAZE00000003	exon	52802143	52802318	-
GWHAAZE00000003	CDS	52803673	52805690	-
GWHAAZE00000003	CDS	52802850	52803208	-
GWHAAZE00000003	CDS	52802143	52802318	-

Transcript Sequence
>GWHTAAZE011213 ATGTACATCAAAAATAACACTATGGGTTCTTTAGCCTTTGAAAAGCCACTCCCCCTCTTATCATTTGTCCTCTTCATTGTACTATTTTCCTCACCCAATATTGTTTCTTCCTCTGTTGAAGAAGCGAATGCTCTGTTTAAATGGAAATCCACCCTTCAAAGAATACCCAAGCCTATGCAATCCTCCTGGTCTCTTCTTCCTCATAAATCTACAAATTCTTCTTCAAATCAAAAAACAACTGTGAGTCCATGCACTTGGTTCGGAGTCTCTTGCAATAGTGAAGGAAGCGTAAATCGATTGAACCTTTCGCAGTCTAACGTAAAAGGTACACTTTATGACCTTTCTTTCAAATTGTTCCCCAATCTCGAGTACATTGATCTTTACATAAATGAACTTTTTGGTACCATCCCACCTCAAATAGGCTCCCTCTCTAAACTCGTATATCTTGTTTTGGCTTCTAATAATTTTATTGGTATAATCCCACCTGAAATATGCTTGCTCACTAGTCTTGAAGTCCTCAGTTTGTTTCATAATCATCTAAATGGGTCAATTCCTCATGACATAGGTAGATTAATGTCCCTTAATGACCTCGCATTGTATACCAATAATCTTGAAGGTCCAATTCCCTCTTCTATTGAAAATTTGAGCAACTTGGCTTATTTATATCTGTACAACAATAAGCTCTCGGGTACCATTCCTCCCGAAATCGGGAATCTCACCAATCTTGTTGAGATCGAATTACAAGATAACCTTTTATTTGGTTCCATTCCGTCTAGTTTTGGGAACTTGAGTAGCCTAACCTTGCTCCATCTACAAAAAAATCAATTAACTGGCTCGATTCCGCTAGAACTAGGGAACTTGAAATTACTCGAGAATCTGGCCCTTTACACAAACAATCTTTCTGGATCAATTCCACCATCGTTAGGTGATCTCGAATCCTTGAGTTACCTATCCTTATCCAATAATCTGCTTTCGAGTTCAATTCCCTCTTCTATTGACAATTTGAGCAACTTGGCTTATTTGTATCTATACAAAAATAAGCTCTCGGGTACCATTCCTCCTGAAATCGGGAATCTCACCAATCTTGTTAAGATCGACTTAAGCGAGAACCTTCTATTTGGCTCCATTCCATCAAGTTTTGGGAACTTGAGTAACCTAACCTTTCTCCAACTATTCAGTAACCAGTTAACTGGCTCCATTCCTTTAGAACTAGGGAACTTGAAATTACTCAGGACAATGGACTTGAGCACAAACAATCTTTCCGGTTATTTTCCAAAAGAGGTATGCACCGGTGGAAGACTTCAAAGATTAATTGTTAGCCACAACAGTATTGTTGGTCCAATTCCCAAAAGCTTGAGAAACTGCTCAAGCTTAATCAGAGTCCGCCTCGAGGGAAACCACTTCACTGGAAACATATCTGAAGTTTTCGGTGTCTATCCGAACTTGAATTTGATGTATTTAAGTGACAACAAATTCTATGGCCATCTTTCGGACAATTGGAGCAAGTGTAAAAAGTTAAAAGACTTTCAAATTGTGAGGAACAATATCACTGGTGGCATACCGTTAGAATTTGGTAGTTCGAATTTCGTTGTACTTGATATTTCATCAAATAAGTTAGTTGGAGAAATTCCAAAGGAGTTTGGTAAATTGAAGCATATGTTGAAATTAGTTTTGAGCAACAACAAACTTTATGGCAATATTCCTCAAGAACTCGGGTCCCTAATTGAGTTGTTGGAACTCGATTTGTCCAAAAATATATTAAATGGGTCCATACCAGGAAATCTTTCAAATTGCTTGAATCTGTTTAGTTTGAGCTTGAGTGACAACAATCTAAGCCAAGATATTCCGGTGGAGATGTCGAATTTATTGCACTTGTCGACTCTCGATTTGAGTGGGAACTCACTAACAGGGGAGATTCCATCTCAAATTAGAAGTTTGCAGAGTTTGGAGAAGTTGAACATTTCTGCAATAAAGCTGTCGGGTGAAATTCCAAATGCTTTTAATGATATGCTGCTTTGCGTGAAGAAACTTCACTCATTATCGAAAATAGTTGATCGTAAAGCTTTTGAGAATGAGGTAAAAGCATTGACAGAAATAAGGCATCGAAACATTGTGAAGCTTCATGGATTTTGTTCACATGCTCAAAATTCCTTTTTGGTTTATGACTACCTCGAAAAAGGTAGCTTAGCTGAAATCTTGAACAAAGAAGAAGAAGCACAAAAGTTGGATTGGCAAAAAAGGGTGAACATTATAAAGAGAGTTGCTCATGCTTTGTCTTACATGCACCATGATTGTTCTCCCCCAATTATTCATCGAGACATATCGAGCAAGAATATTTTGCTTGATTCCGAGTATGAGGCATGTGTTTCAGATTTTGAGTTTGCTTACACAATGAAGGTTACGGAAAAGTGTGATGTGTATAGCTTTGGGGTACTATCATTGGAAGTGCTTAGAGGAAAGCATCCAGGTGATTATATTGCTTCACTGTTATCTCAATCAAGTGAAGACAATCAACTTAAAGATGCATTGGATGAACGACTTCCACCTCCTTGA

Network for GWHGAAZE011201

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	41	92	6.10E-05
PF07714.18	PK_Tyr_Ser-Thr	669	796	7.60E-24

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.136
	SRR3591706	second leaf	0.421
	SRR3591707	mature leaf	1.981
	SRR3591708	Shoot apex	0.018
	SRR3591709	Stem	2.186
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.033
	SRR8316896	Juvenile bud stage	0.013
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.005
	SRR8316901	Third green stage	0.003
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.045
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.014
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.013
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.008
	CNS0095595	Whole white alabastrum(diploid) 2	0.026
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.097
	CNS0095599	Silvery flower (diploied) 2	0.017
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.152
	CNS0095602	Golden flower (diploid) 2	0.033
	CNS0095603	Golden flower (diploid) 3	0.034
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.020
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.153
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.010
	CNS0095610	Silvery flower (tetraploid) 1	0.012
	CNS0095611	Silvery flower (tetraploid) 2	0.110
	CNS0095612	Silvery flower (tetraploid) 3	0.024
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.003
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.073
	CRR073320	Tawny withering 3	0.016