Gene detail

Detail information of GWHGAAZE011197

Functional Annotation

Database	Orthologs	Annotation
Nr	CAN73988.1	hypothetical protein VITISV_022117 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A5B048\|A5B048_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73988.1}
TAIR10	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	52225837	52229518	+
GWHAAZE00000003	mRNA	52225837	52229518	+
GWHAAZE00000003	exon	52225837	52226169	+
GWHAAZE00000003	exon	52226374	52226866	+
GWHAAZE00000003	exon	52226949	52227274	+
GWHAAZE00000003	exon	52227384	52228670	+
GWHAAZE00000003	exon	52229211	52229518	+
GWHAAZE00000003	five_prime_UTR	52225837	52225865	+
GWHAAZE00000003	CDS	52225866	52226169	+
GWHAAZE00000003	CDS	52226374	52226866	+
GWHAAZE00000003	CDS	52226949	52227274	+
GWHAAZE00000003	CDS	52227384	52228670	+
GWHAAZE00000003	CDS	52229211	52229518	+

Transcript Sequence
>GWHTAAZE011209 TGCTTGTATTATGTACATCAACCAACGCTATGGATTCTCTAGCCTTTGAAAAGCCTCTCACCCTTTTATCAATTGTCCTCTTTGTTATAATATTCTCCTCACCCAATATTGCTTCTGCCTCTGTAGAAGAAGCAAATGCTTTGCTTCAATGGAAATCCACCCTTCAAATAATACCCAAGCTTATGCAATCCTCTTGGTCTCTTCTTCCTCAGAAATCCACAAATTCTTCTTATGTTCAAAATACAAGTGTGAGTCCATGCACTTGGTTCGGGGTCTATTGCAATAGTGAAGGAAGCGTAAATCGATTGAACCTTTCAGTTTCTGACATAAAAGAAAATCAGCTAAATGGCTCAATTCCTCATAACATAGGTAGACTAAAGTCTCTTAATGAGCTCGCATTGTATACCAATAATCTTGATGGTCCAATTCCCTCTTCTATTGTCAATTTGAGCAACCTTAACTATTTATATATTTACCAAAATAAGCTCTCAGGCACCATTCCCCAAGAAATTGGGAATCTAACCAATCTTATTGAGATCTTCTTCAACAATAACCTTCTATTTGGTTCCATTCCATCAAGTTTGGGGAACTTGTATAATCTAACGGTGCTCCACCTATTCCATAACCGATTAACTGGCTTCATTCCCCCAGAACTAGGGAAATTGAAAGTACTCGAAAGTCTGGCCCTTAACACAAACAATCTTTCTGGACCAATTCCACCATCATTAGGTGATCTCGAATCCTTGAGTTATCTATATTTGTACAACAATCATCTTTCTGGTCCAATTCCTAAAGAACTAGGAAACTTGAAGAACCTTATTGAAATACAACCAACTTTCGGTCCCATCCCTCAACAGTTGGAAATGCTTGAATTAGTTGTCCTTGCACTAGATTTGAATAGGCTCTCCGATAATTTGCCAACTGAGATATGCAATGGTGGAAAACTTCAAAATCTGACTGTTAACGACAACAATCTTGTTGGTCCAATTCCCAAAAGCTTGAGAAACTGCTTAAGCTTAACCAGAGTTCGCCTTGATGGAAACCAGTTCACAGGAAACATATCTGAAGTTTTTGGTGTCTATCCAAACTTGCAATTGATTTATTTAAGTGACAACAAACTCTACGGTCATCTTTCTGACAATTGGAGCAAGTTTGGGGAGATTCCAAAGGAGTTTGGGAAATTGAAGCAGATGTTGAGGTTAGTTTTGAGCGACAACCAATTTTTTGGCAATATTCCTCAGGAATTCGGATTGCTAACTGAGTTGTTGGATCTTGATTTGTCCAAAAACAAATTAAGTGGGTCCATACCATCAAATCTTTCCAATTGCTTAAGTTTATTTAATTTAAGCTTGAGTAACAACAATTTCAGCCAAGATATTCCAGTGGAGATGACTAGGTTATTGCACTTGACAACTCTTGATTTGAGTGGTAACTCACTAACAGGGGAGATTCCATCTCAAATTAAAAGTTTGCAAAGTTTGGAGAAGTTAAATCTTTCTTGCAATAAACTCTCGGGTGAAATTCCAGATGCTTTTAATGATATGTCTGCTTTGTTATATATTGACATATCCTACAATGAGCTTTATGGTCCTATCCCAAATAGCAAAGTTTTTGCAAATGCGACTATAGAAGTATTACGAGGTAACAAAGGTTTGTGTGGTAATGTTAAAGGATTGCAACATTGTGTAGATCTTTCTGGGGTGTTAAAGCATAAACCAAAAATGTCCCATAAACTTGTTCTTATAGTTGTACTCCCTCTTGTTGCATCGTTTTTACTTCTTTGTGCTTTCGTTCTATTCTTCATCATTTGTGATCGAAGAAAAAGAAAGCCAAAAGCAGAGGAGGAAAGGGATGATCAATCTTTATTTTCGATATCAAGTTTTGATGGGAGGGCAATGTACAACGAAATCATAAAAGCCACGAATGATTTTGACGTCGAGTATTGTATTGGAAAAGGAGGGTTTGGAGCAGTTTACAAAGTGAAAATGCAATCAGCTAATGTTGTAGCTGTAAAGAAACTTCACTCATTGTCGGAAATAGTTGACCGTAATGCTTTTGTGAATGAGGTGAAAGCATTGACTCAAATAAGGCATCGAAACATTGTGAAGCTTCATGGATTTTGTTCACATGCTCGAAATTCATTTTTGGTTTATGACTACCTCGAAAGGGGTAGTTTAGCTGAAATCTTGAGCAAGGAAGAAGCAAAGAAATTGAATTGGCAAAAAAGGGTGAACATTATAAAGGGCGTCGCTCATGCTTTGTCATACATGCACCATGATTGTTCTCCCCCAATTGTTCATCGCGACGTATCTAGCAAGAATATTTTACTTGATTCAGAGTATGAAGCTTGTGTTTCAGATTTTGGTACTGCTAAGATTTTGAAGCTAGACACATCAAACTGGAGTGCAGTCGCCGGAACATATGGATATATTGCACCAGAGTTTGCTTACACAATGAAGGTAACGGAAAAGTGTGATGTGTATAGCTTTGGAGTACTATCATTGGAAGTGATTAAAGGAAAGCATCCGGGTGACTACATTGATTCGCTGTTATCTCCATCAATTGAACGCAAGCAACTTAACAAAAGCATGTTAGACGAACGACTTCCACCTCCATCACTTGAGGATGAGGAGTTATTACAATCCATCATGATAGTAGCAAAAGCATGTTTACATAACAATCCTCAATTAAGGCCAACAATGCACATTGTTTCTCAAATGCTATCTGTCAAAACGCTTGCGTCTTAA

Network for GWHGAAZE011197

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	34	85	1.60E-05
PF13855.7	LRR_8	459	518	3.30E-11
PF07714.18	PK_Tyr_Ser-Thr	639	897	6.00E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.880
	SRR3591706	second leaf	0.241
	SRR3591707	mature leaf	0.151
	SRR3591708	Shoot apex	0.302
	SRR3591709	Stem	15.534
	SRR3591710	White floral bud	0.062
	SRR3591711	White flower	0.071
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.024
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.075
	SRR8316901	Third green stage	0.083
	SRR8316898	Complete white stage	0.172
	SRR8316899	Complete white stage	0.290
	SRR8316903	Complete white stage	0.207
	SRR8316902	Silver flowering stage	0.131
	SRR8316904	Silver flowering stage	0.200
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.091
	SRR8316908	Gold flowering stage	0.102
SRP132670	SRR6706286	Control	0.045
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.012
	CNS0095594	Slightly white alabastrum(diploid) 3	0.072
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.224
	CNS0095600	Silvery flower (diploied) 3	0.055
	CNS0095601	Golden flower (diploid) 1	0.005
	CNS0095602	Golden flower (diploid) 2	0.262
	CNS0095603	Golden flower (diploid) 3	0.452
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.023
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.005
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.087
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.240
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	4.413
	CRR073319	Tawny withering 2	6.766
	CRR073320	Tawny withering 3	5.571