Gene detail

Detail information of GWHGAAZE011183

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010663893.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A5AGK9\|A5AGK9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68996.1}
TAIR10	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	51180763	51184157	+
GWHAAZE00000003	mRNA	51180763	51184157	+
GWHAAZE00000003	exon	51180763	51182889	+
GWHAAZE00000003	exon	51183062	51183587	+
GWHAAZE00000003	exon	51183853	51184157	+
GWHAAZE00000003	CDS	51180763	51182889	+
GWHAAZE00000003	CDS	51183062	51183587	+
GWHAAZE00000003	CDS	51183853	51184157	+

Transcript Sequence
>GWHTAAZE011195 ATGGGTTCCATGGCCTTTCAAAACTCTCTCTCCTTTCTATCATTATCTTTAGTCTTGTCTTTTGCAATATTTTCTTCACCCAATTTTGCTTCTGCCTCTATTGAAGAAGCAAATGCTCTTCTTCAGTGGAAATCCAGCCTTGAAAGAACAAACAATCCTATTGAATCCTCATGGTCACTTCTTGCTCGAAATTCCACAAATTCTTCTTCAAATCAAAGTACTAGTGTGAGTCCATGTACTTGGTTTGGAGTTTCTTGCAATCTCGAAGGAAGCGTAAATCGGTTGAATCTTTCTGTGTCAGTCATAAAAGGTACGCTTTACAACTTTTCATTCACATCGTTTCCTAATCTCGCGTACATTGATCTCGCCCAAAATGAATTTTTCGGTACCATCCCACCTCAAATTGGGTCCCTCTCTAAACTTGTGTATCTCGATTTGTCTACTAATAATTTTGTTGGTATAATCCCGCCCGAAATATGCTTGCTCACTAATCTTGAAGTCCTCCATTTGGTTGAATGTCAACTTAATGGCTCAATTCCTAGTGAGATAGGTCAACTAACGTCTCTTTATGAGCTCGCATTGTATACCAACAATCTCGACGGTCCAATTCCCTCTTCTATTGGCAATTTAAGCAATTTGACTCATTTATATCTCTACCAAAATAAGCTCACCGGAACCATTCCTCCACAAATGGGGAATCTCACCAATCTTGTTGAGATTTTCTTAAACAATAACCTTCTGTTTGGTTCCATCCCATCAAGTTTTGGAAAGTTGAATAACCTGACTGTGCTCCACCTATTCACTAACCAAATAACCGGTTCCATTCCCATGGAACTAGGGAATTTGAAATCACTCGAGAGTTTAGCACTTAACACGAACAATCTTTCTGGGTCAATTCCACCGTCATTAGGTAATCTAGAATCATTGACTTTTCTATATTTGTACAATAATCAGCTCACGGGTACGATTCCTAAAGAGCTAGGAAAACTGGGCCTCCTAGTTGACTTATACTTGAATATCAATCGACTCACTGGTTCTATTCCTTCTTCACTTGGCAACCTCAGTAATCTTGAAATGTTGTTCCTTCGCGACAATCAACTTTTCGGTCCCATTCCACAAGAATTGGGAAGGCTTGAAGTGATTGTACTTGCAATAGACAAGAATAGACTCTCCGGTTATTTTCCAGAACATATTTGCTATGGTGGTAAGCTTCAAAACTTGACCATAAATAGCAACAATCTTATTGGTCCCTTTCCCAAAAGTTTGAGAAATTGCTCGAGCTTAATCAGAGTTCGCCTCGATCAAAACCAATTCACTGGAAACATATCCGAAACATTCGGTGTCTATCCAAACTTGCAATTGATGTATCTAAGTGATAACAATTTCTATGGTCATCTTTCTGATAATTGGAGTAAGTGTGAAAAATTGACCGACTTACAAATTGCAAAGAACAACATCACTGGTAGCATACCATTATCACTTGGAAATTCTACTCAACTAGGTGTACTTGATATTTCGTCAAATAATTTAGTTGGGGAGATTCCAAAGGAATTTGGAAAATTGAAGAGTTTGTTGAGGTTGGTTTTGAGTGATAACCAATTTGTCGGAAATATTCCTCGAGAACTCGAATCACTAACTAAGTTATTGGACCTTGATCTATCCAAAAATAGATTAAGTGGATCCATACCGGCAAATCTTTCGAACTGCTTGAATTTGTTTAACTTGAACCTGAGTAACAACAATTTTAGCCAAGAAATTCCAATGGAGATTACCAGGTTATTACACTTGTCCACTCTTGATTTGAGTGGTAACTTATTGACAGGGGAGATTCCATCTCAAATTCAAAGTTTGCAAAGTTTGGAGAAGTTGAATCTCTCTCACAATAAACTCTCGGGTGAGATTCCGAATTCTTTTGATGATATGAATTCATTATTATATGTTGACATATCATACAATGAACTATTTGGTCCTATCCCAAATAGCAAAGTTTTTTCAAATGCATCTATTGATGTATTACAAGGAAATAACGGTTTGTGTGGAAAGGTTGAAGGATTGAAACCTTGTGTGAACTCTACCACTGCAGCAAAGAACAAAGCAAAAAAGAAGCATAAAATCATTCTCATAGTGGCCACAAAGGATTTTGATGTCCAGTATTGTATCGGAGAAGGAGGATTCGGCACTGTTTACAAGGCGAAATTGCAATCGGCCAATGTTGTAGCTGTGAAAAAACTTCACTCAGTATCTAACATAGCTGATCGCAACTCTTTTTTCAATGAGATAAAAGCATTAACTGAAATAAGACATCGAAATATTGTGAAGCTTCATGGATTCTGTTCACATGCTAGACACTCATTTTTGGTTTATGACTACCTTGAAAAGGGTAGCTTAGCCAAAATATTGAGTAAAGAAGAAGAGGCAAGGAAATTAGATTGGAAAAAGAGGGTGAACATTATTAAAGGCGTTGCTCATGCTTTGTCTTACATGCACCACGACTGCTCTCCCCCAATTGTTCATCGAGACATATCGAGTAAGAATATTTTGCTTAATTCTGAGTATGAGGCATGTGTTTCTGATTTTGGTACGGCTAAGATTTTGAAGGCAGACTCATCAAATTGGAGCACTGTCGCTGGAACATATGGATACGTTGCACCAGAGCTTGCTTACACGATGAAGGTAACTGAAAAGTGTGATGTGTATAGCTTTGGAGTATTATCTTTGGAAGTGATTAAAGGAAAGCATCCGGGAGATTACATCACTTCACTATTATCTCGGTCAAATGAAGAAAGACAAATTAAAGATGCATTGGACGAACGCCTTCCACGCCCATCACACGTAGCTGAGGAGCTATTGCTATCTATCATAGTACTAGCAAAAGCATGTTTAAATAGCAATCCTCAATCAAGGCCAACAATGCACATTATTTGTCAGATGTTATCAGCAAAAACATCTCATTCCTAA

Network for GWHGAAZE011183

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	35	87	6.00E-07
PF13855.7	LRR_8	595	654	2.70E-10
PF00069.26	Pkinase	719	976	1.40E-49

Protein Sequence

>GWHPAAZE011189
MGSMAFQNSLSFLSLSLVLSFAIFSSPNFASASIEEANALLQWKSSLERTNNPIESSWSLLARNSTNSSSNQSTSVSPCTWFGVSCNLEGSVNRLNLSVSVIKGTLYNFSFTSFPNLAYIDLAQNEFFGTIPPQIGSLSKLVYLDLSTNNFVGIIPPEICLLTNLEVLHLVECQLNGSIPSEIGQLTSLYELALYTNNLDGPIPSSIGNLSNLTHLYLYQNKLTGTIPPQMGNLTNLVEIFLNNNLLFGSIPSSFGKLNNLTVLHLFTNQITGSIPMELGNLKSLESLALNTNNLSGSIPPSLGNLESLTFLYLYNNQLTGTIPKELGKLGLLVDLYLNINRLTGSIPSSLGNLSNLEMLFLRDNQLFGPIPQELGRLEVIVLAIDKNRLSGYFPEHICYGGKLQNLTINSNNLIGPFPKSLRNCSSLIRVRLDQNQFTGNISETFGVYPNLQLMYLSDNNFYGHLSDNWSKCEKLTDLQIAKNNITGSIPLSLGNSTQLGVLDISSNNLVGEIPKEFGKLKSLLRLVLSDNQFVGNIPRELESLTKLLDLDLSKNRLSGSIPANLSNCLNLFNLNLSNNNFSQEIPMEITRLLHLSTLDLSGNLLTGEIPSQIQSLQSLEKLNLSHNKLSGEIPNSFDDMNSLLYVDISYNELFGPIPNSKVFSNASIDVLQGNNGLCGKVEGLKPCVNSTTAAKNKAKKKHKIILIVATKDFDVQYCIGEGGFGTVYKAKLQSANVVAVKKLHSVSNIADRNSFFNEIKALTEIRHRNIVKLHGFCSHARHSFLVYDYLEKGSLAKILSKEEEARKLDWKKRVNIIKGVAHALSYMHHDCSPPIVHRDISSKNILLNSEYEACVSDFGTAKILKADSSNWSTVAGTYGYVAPELAYTMKVTEKCDVYSFGVLSLEVIKGKHPGDYITSLLSRSNEERQIKDALDERLPRPSHVAEELLLSIIVLAKACLNSNPQSRPTMHIICQMLSAKTSHS

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.595
	SRR3591706	second leaf	1.111
	SRR3591707	mature leaf	2.061
	SRR3591708	Shoot apex	1.312
	SRR3591709	Stem	1.592
	SRR3591710	White floral bud	0.355
	SRR3591711	White flower	0.994
	SRR3591712	Green floral bud	0.395
	SRR3591713	Yellow flower	0.986
SRP173429	SRR8316895	Juvenile bud stage	1.916
	SRR8316896	Juvenile bud stage	2.530
	SRR8316897	Juvenile bud stage	0.465
	SRR8316894	Third green stage	0.882
	SRR8316900	Third green stage	0.708
	SRR8316901	Third green stage	0.833
	SRR8316898	Complete white stage	0.134
	SRR8316899	Complete white stage	1.189
	SRR8316903	Complete white stage	0.528
	SRR8316902	Silver flowering stage	1.229
	SRR8316904	Silver flowering stage	1.861
	SRR8316905	Silver flowering stage	0.667
	SRR8316906	Gold flowering stage	7.680
	SRR8316907	Gold flowering stage	4.546
	SRR8316908	Gold flowering stage	7.941
SRP132670	SRR6706286	Control	0.744
	SRR6706287	Light intensity 50%	0.755
	SRR6706288	Light intensity 20%	0.449
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.049
	CNS0095593	Slightly white alabastrum(diploid) 2	1.580
	CNS0095594	Slightly white alabastrum(diploid) 3	1.972
	CNS0095595	Whole white alabastrum(diploid) 2	0.536
	CNS0095596	Whole white alabastrum(diploid) 3	0.414
	CNS0095597	Whole white alabastrum(diploid) 4	0.523
	CNS0095598	Silvery flower (diploied) 1	1.780
	CNS0095599	Silvery flower (diploied) 2	1.452
	CNS0095600	Silvery flower (diploied) 3	1.204
	CNS0095601	Golden flower (diploid) 1	2.712
	CNS0095602	Golden flower (diploid) 2	1.540
	CNS0095603	Golden flower (diploid) 3	1.475
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.594
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.783
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.768
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.182
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.225
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.456
	CNS0095610	Silvery flower (tetraploid) 1	0.344
	CNS0095611	Silvery flower (tetraploid) 2	0.068
	CNS0095612	Silvery flower (tetraploid) 3	0.369
	CNS0095613	Golden flower (tetraploid) 1	0.811
	CNS0095614	Golden flower (tetraploid) 2	0.481
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.096
	CRR073298	Stem 2	0.597
	CRR073299	Stem 3	0.101
	CRR073300	Leaf 1	0.141
	CRR073301	Leaf 2	0.371
	CRR073302	Leaf 3	0.101
	CRR073303	Juvenile bud 1	0.050
	CRR073304	Juvenile bud 2	0.034
	CRR073305	Juvenile bud 3	0.217
	CRR073306	Third green 1	0.022
	CRR073307	Third green 2	0.081
	CRR073308	Third green 3	0.093
	CRR073309	Second white 1	0.154
	CRR073310	Second white 2	0.368
	CRR073311	Second white 3	0.478
	CRR073312	Silver flowering 1	0.887
	CRR073313	Silver flowering 2	0.730
	CRR073314	Silver flowering 3	0.368
	CRR073315	Gold flowering 1	0.534
	CRR073316	Gold flowering 2	1.192
	CRR073317	Gold flowering 3	0.497
	CRR073318	Tawny withering 1	3.587
	CRR073319	Tawny withering 2	4.787
	CRR073320	Tawny withering 3	2.572