Gene detail

Detail information of GWHGAAZE011178

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002278561.2	PREDICTED: uncharacterized protein LOC100243949 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A5AGK9\|A5AGK9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68996.1}
TAIR10	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	50580967	50584368	-
GWHAAZE00000003	mRNA	50580967	50584368	-
GWHAAZE00000003	exon	50580967	50581371	-
GWHAAZE00000003	exon	50581557	50584368	-
GWHAAZE00000003	CDS	50581557	50584368	-
GWHAAZE00000003	CDS	50581067	50581371	-
GWHAAZE00000003	three_prime_UTR	50580967	50581066	-

Transcript Sequence
>GWHTAAZE011190 ATGGCCTTTCAAAACTCTCTCTCCTTTCTATTATTATCTTTAGTCTTGTCTTTTGTAATATTTTCTTCACCCAATATTGCTTCTGCCTCTATTGAAGAAGCAAATACTCTTCTTCAGTGGAAGTCCACCCTTGAAAGAACAAACAATCCTATTGAATCCTCATGGTCACTTCTTCCCCGAAATTCCACAAATTCTTCTTCAAATCAAAGTACAAGTGCAAGTCCATGTACTTGGTTTGGAGTTTCTTGCAATCTCGAAGGAAGTGTAAATCGTTTGAACCTTTCAGTGTCACTCATAAAAGGTACGCTTTACAACTTTTCTTTCACATCGTTTCCTAATCTCGAGTACATTGATCTCTACCAAAATGAATTTTTCGGTACCATCCCACCTCAAATTGGGTCCCTCTCTAAACTCGTATATCTTGATTTGTCTATTAATAATTTTGTTGGTACAATCCCACCCGAAATATGCTTGCTCACTAATCTTGAAGTCCTCCATTTGGTTGAATGTCAACTTAATGGCTCAATTCCTAGTGAGATAGGTCAACTAACGTCTCTTAATGAGCTCGCATTGTATACCAACAATCTCGACGGCCCAATTCCCACTTCTATTGGCAATTTAAGCAATTTGGCTCGTTTACATCTCCACGAAAATAACCTCACCGGTACCATTCCTTCACAAATAGGGGGTCTCACCAATCTTGTTGAGATTTTCTTAAACAATAACCATCTGTTCGGTTCCATCCCATCAAGTTTTGGAAACTTGAACCTGACCGTGCTTTACCTATCCAGTAACCAAATAACTGGTTCCATTCCTATGGAAATAGGGAATCTGAAATCACTCGAGACTTTAGCACTTGACGTGAACGATCTTTCTGGGTCAATTCCACCTTCATTAGGTAATTTAGAATCCTTGACTTCTCTATATTTGAACAATAATCAGCTCACGGGTACGATTCCTGAAGAGCTAGGGAAACTGGGGTACCTAATTGACCTATACTTGAACATTAATCGACTCACTGGTTCTATTCCTTCTTCACTTGGCAACCTCACTAATCTTGAAATGTTGTTCCTTCGCGACAATCAACTTTTCGGTCCCATTCCACAAGAATTGGGAAGGCTTGAATTGATTGCACTTGCAATAGACAATAATAGACTCTTCGGTTATTTTCCAGAACATATTTGCTATGGTGGTAAGCTTCAAAAGTTGACCATAAATAGCAACAGTCTTACTGGTCCCTTTCCCAAAAGTTCGAGAAATTGCTCGAGCTTAATCAGAGTTCGCCTCGATCAAAACCAATTCACTGGAAATATATCCGAAACATTCGGTGTCTATCCAAACTTGAAATTGATGTATCTAAGTGATAACAATTTCTATGGTCATCTTTCTGATAATTGGAGTAAGTGTGAAAAATTGACCGATTTACAAATTGAGAGGAACAACATCACTGGTAGCATACCTCTATCATTTGGAAATTCAACTCAACTAGGTGTACTTGATATTTCGTCAAATCATTTAGTTGGGGAGATTCCAAAGGAATTTGGGAAATTGAAGAATTTGTTGAGGTTGGTTTTGAGTGATAACCAATTTTTTGGAAATATTCCTCGAGAACTTGAATCACTAACTGAGTTATTGTACCTTGATCTATCCAAAAATAGATTAAGTGGGTCCATACCAGCAAATCTTTCGAACTGCTTGAAACTGTTTAACTTGAACCTGAGTAACAACAATTTCAGCCAAGAAATTCCAATGGAGATTACCAGATTATTACACTTGTCCACTCTTGATTTGAGTGGTAACTTATTGACAGGGGAGATTCCATCTCAAATCCAAAGTTTGCAAAGTTTGGAGATGTTGAATCTTTCTCACAATAAACTCTCGGGTGAGATTCCAAATTCTTTTGACGAAATGAATTCATTATTATATGTTGACATATCGTACAATGAACTATATGGTCCTATCCCAAAAAAAAAAGTTTTTTCAAATGCGTCTATCGATGTATTACGAGGAAATAATGGTTTGTGTGGAAAGGTTGAAGGATTGAAACCTTGTGCGAACTCTACCACTATGCCAAAGAGCAAAGCAAAAAAGAAGTATAAAATCATTCTCATTGTGGTACTCCCTCTCATGGTATCACTTTTACTTCTTTTTGGATTTGTTATATTGTTCAACATTTATGAGCGAAGAAGAAGGAAGTCAAAAACGGAGGAAAGAGATGCACATGATCAAGATATATTTTCGATATCTAGTTTCGATGGAAAGTCAATGTACAACGAAATCTTAAAGGCCACACAAGATTTTGATGTCCAGTATTGTATTGGAGAAGGAGGATTCGGCACTATTTACAAGGCGAAATTGCAATCGGCCAATGTTGTAGCTGTGAAAAAACTTCACTCAGTATCGAACATAGCTGACCGCAACTCTTTCTTGAATGAGATAAAAGCATTAACTGAAATAAGACACCGAAATATTGTGAAGCTTCATGGATTCTGTTCACATGCTAGACACTCATTTTTGGTTTATGACTACCTTGAAAGGGGTAACTTAGCCAAAATATTGAGTGAAGAAGAAGAGGCAAGGAAATTAGATTGGAAAAAGAGGGTGACCATTATTAAAGGCGTTGCTCATGCTTTGTCTTACATGCACCACGACTGCTTGCCCCCAATTGTTCATCGAGACATATCGAGTAAAAATATTTTGCTTAATTCTGAGTATGAGGCATGTGTTTCTGATTTTGGTACGGCTAAGATTTTGAAGGCAGACTCATCAAATTGGAGCACTCTCGCTGGAACATATGGATACGTTGCACCAGAGCTTGCTTACACCATGAAGGTAACCGAAAAGTGTGATGTGTATAGCTTTGGAGTATTATCTTTGGAAGTGATTAAAGGAAAGCATCCGGGAGATTACATCACTTCACTATTATCTCGGTCAAATGAAGACAGGCAAATTAAAGATGCATTGGATGAACGCCTTCCACGTCCATCACACGAAGCTGAGGATCTATTGCTATCTATCATAGCACTAGCAAAAGCATGTTTAAATAGCAATCCTCAATCAAGGCCGACAATGCACATTCTTTGTCAGATGTTATCAGTCAAAACACCTCATTCCTAAATGCAATGGTTGTATTTTTCATCGTTTTGTGTTTTAGTATATGTCAAATATTAGAGATCTGTTGCTCTTAATTGATTTAAGTTATCAGCTTGTGAAAAAA

Network for GWHGAAZE011178

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	32	84	1.40E-05
PF13855.7	LRR_8	304	363	3.10E-07
PF13855.7	LRR_8	471	530	5.80E-07
PF13855.7	LRR_8	591	650	4.30E-10
PF00069.26	Pkinase	772	1029	1.50E-47

Protein Sequence

>GWHPAAZE011184
MAFQNSLSFLLLSLVLSFVIFSSPNIASASIEEANTLLQWKSTLERTNNPIESSWSLLPRNSTNSSSNQSTSASPCTWFGVSCNLEGSVNRLNLSVSLIKGTLYNFSFTSFPNLEYIDLYQNEFFGTIPPQIGSLSKLVYLDLSINNFVGTIPPEICLLTNLEVLHLVECQLNGSIPSEIGQLTSLNELALYTNNLDGPIPTSIGNLSNLARLHLHENNLTGTIPSQIGGLTNLVEIFLNNNHLFGSIPSSFGNLNLTVLYLSSNQITGSIPMEIGNLKSLETLALDVNDLSGSIPPSLGNLESLTSLYLNNNQLTGTIPEELGKLGYLIDLYLNINRLTGSIPSSLGNLTNLEMLFLRDNQLFGPIPQELGRLELIALAIDNNRLFGYFPEHICYGGKLQKLTINSNSLTGPFPKSSRNCSSLIRVRLDQNQFTGNISETFGVYPNLKLMYLSDNNFYGHLSDNWSKCEKLTDLQIERNNITGSIPLSFGNSTQLGVLDISSNHLVGEIPKEFGKLKNLLRLVLSDNQFFGNIPRELESLTELLYLDLSKNRLSGSIPANLSNCLKLFNLNLSNNNFSQEIPMEITRLLHLSTLDLSGNLLTGEIPSQIQSLQSLEMLNLSHNKLSGEIPNSFDEMNSLLYVDISYNELYGPIPKKKVFSNASIDVLRGNNGLCGKVEGLKPCANSTTMPKSKAKKKYKIILIVVLPLMVSLLLLFGFVILFNIYERRRRKSKTEERDAHDQDIFSISSFDGKSMYNEILKATQDFDVQYCIGEGGFGTIYKAKLQSANVVAVKKLHSVSNIADRNSFLNEIKALTEIRHRNIVKLHGFCSHARHSFLVYDYLERGNLAKILSEEEEARKLDWKKRVTIIKGVAHALSYMHHDCLPPIVHRDISSKNILLNSEYEACVSDFGTAKILKADSSNWSTLAGTYGYVAPELAYTMKVTEKCDVYSFGVLSLEVIKGKHPGDYITSLLSRSNEDRQIKDALDERLPRPSHEAEDLLLSIIALAKACLNSNPQSRPTMHILCQMLSVKTPHS

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.472
	SRR3591706	second leaf	60.547
	SRR3591707	mature leaf	171.362
	SRR3591708	Shoot apex	7.202
	SRR3591709	Stem	1.014
	SRR3591710	White floral bud	0.418
	SRR3591711	White flower	1.011
	SRR3591712	Green floral bud	0.158
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.836
	SRR8316896	Juvenile bud stage	1.136
	SRR8316897	Juvenile bud stage	0.082
	SRR8316894	Third green stage	0.396
	SRR8316900	Third green stage	1.963
	SRR8316901	Third green stage	1.553
	SRR8316898	Complete white stage	0.117
	SRR8316899	Complete white stage	2.193
	SRR8316903	Complete white stage	0.434
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.030
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.025
	SRR8316907	Gold flowering stage	0.021
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.524
	SRR6706287	Light intensity 50%	0.779
	SRR6706288	Light intensity 20%	0.785
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.344
	CNS0095593	Slightly white alabastrum(diploid) 2	0.622
	CNS0095594	Slightly white alabastrum(diploid) 3	0.295
	CNS0095595	Whole white alabastrum(diploid) 2	0.751
	CNS0095596	Whole white alabastrum(diploid) 3	0.354
	CNS0095597	Whole white alabastrum(diploid) 4	0.646
	CNS0095598	Silvery flower (diploied) 1	1.642
	CNS0095599	Silvery flower (diploied) 2	0.923
	CNS0095600	Silvery flower (diploied) 3	0.424
	CNS0095601	Golden flower (diploid) 1	1.243
	CNS0095602	Golden flower (diploid) 2	0.285
	CNS0095603	Golden flower (diploid) 3	0.424
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.851
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.961
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.115
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.187
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.097
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.222
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.881
	CNS0095612	Silvery flower (tetraploid) 3	0.605
	CNS0095613	Golden flower (tetraploid) 1	0.003
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.162
	CRR073298	Stem 2	0.234
	CRR073299	Stem 3	0.052
	CRR073300	Leaf 1	0.312
	CRR073301	Leaf 2	0.308
	CRR073302	Leaf 3	0.170
	CRR073303	Juvenile bud 1	0.740
	CRR073304	Juvenile bud 2	0.232
	CRR073305	Juvenile bud 3	1.002
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.116
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.047
	CRR073315	Gold flowering 1	34.434
	CRR073316	Gold flowering 2	62.119
	CRR073317	Gold flowering 3	23.196
	CRR073318	Tawny withering 1	1.161
	CRR073319	Tawny withering 2	0.532
	CRR073320	Tawny withering 3	0.174