Gene detail

Detail information of GWHGAAZE011167

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP11441.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A0A068USM9\|A0A068USM9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_55 {ECO:0000313\|EMBL:CDP11441.1}
TAIR10	AT4G08850.1	2E-178	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	49865219	49868732	-
GWHAAZE00000003	mRNA	49865219	49868732	-
GWHAAZE00000003	exon	49867165	49868732	-
GWHAAZE00000003	exon	49866935	49866993	-
GWHAAZE00000003	exon	49866195	49866836	-
GWHAAZE00000003	exon	49865930	49866010	-
GWHAAZE00000003	exon	49865219	49865389	-
GWHAAZE00000003	CDS	49867165	49868732	-
GWHAAZE00000003	CDS	49866935	49866993	-
GWHAAZE00000003	CDS	49866195	49866836	-
GWHAAZE00000003	CDS	49865930	49866010	-
GWHAAZE00000003	CDS	49865256	49865389	-
GWHAAZE00000003	three_prime_UTR	49865219	49865255	-

Transcript Sequence
>GWHTAAZE011179 ATGGATTCTCTAGCCTTTGAAAAGCCTCTCACCCTTTTATCAATTGTCCTCTTTGTTATAATATTCTCCTCACCCAATATTGCTTCTGCCTCTGTAGAAGAAGCAAATGCTTTGCTTCAATGGAAATCCACCCTTCAAATAATACCCAAGCTTATGCAATCCTCTTGGTCTCTTCTTCCTCAGAAATCCACAAATTCTTCTTATGTTCAAAATACAAGTGTGAGTCCATGCACTTGGTTCGGGGTCTATTGCAATAGTGAAGGAAGCGTAAATCGATTGAACCTTTCAGTTTCTGACATAAAAGGTACGCTTTACAACTTTTCTTTCACATCATTCCCCAATCTCGAGTACATTGATCTTGCCCAAAATGCACTTTTCGGCACCATCCCTTCTCAAATAGGTTCCCTTTCTAAACTCGTATATCTCGATTTGTCTACGAATAATTTTGTTGGTATAATCCCACCCGAAATATGCTTGCTCACAAGTCTTGAAGTTCTCCATTTGGTAGAAAATCAGCTAAATGGCTCAATTCCTCATAACATAGGTAGACTAAAGTCTCTTAATGAGCTCGCATTGTATACCAATAATCTTGATGGTCCAATTCCCTCTTCTATTGTCAATTTGAGCAACCTTAACTATTTATATATTTACCAAAATAAGCTCTCAGGCACCATTCCCCAAGAAATTGGGAATCTAACCAATCTTATTGAGATCTTCTTCAACAATAACCTTCTATTTGGTTCCATTCCATCAAGTTTGGGGAACTTGTATAATCTAACGGTGCTCCACCTATTCCATAACCGATTAACTGGCTTCATTCCCCCAGAACTAGGGAAATTGAAAGTACTCGAAAGTCTGGCCCTTAACACAAACAATCTTTCTGGACCAATTCCACCATCATTAGGTGATCTCGAATCCTTGAGTTATCTATATTTGTACAACAATCATCTTTCTGGTCCAATTCCTAAAGAACTAGGAAACTTGAAGAACCTTATTGAAATGTACTTAAATGTAAATAAACTCAGTGGTTCTATTCCTCCTTCACTTGGAAACCTCACAAATTTAGAAATTTTGTTCCTTCGCGACAACCAACTTTCGGGTCCCATCCCTCAACAGTTGGAAATGCTTGAATTAGTTGTCCTTGCACTAGATTTGAATAGGCTCTCCGATAATTTGCCAACTGAGATATGCAATGGTGGAAAACTTCAAAATCTGACTGTTAACGACAACAATCTTGTTGGTCCAATTCCCAAAAGCTTGAGAAACTGCTTAAGCTTAACCAGAGTTCGCCTTGATGGAAACCAGTTCACAGGAAACATATCTGAAGTTTTTGGTGTCTATCCAAACTTGCAATTGATTTATTTAAGTGACAACAAACTCTACGGTCATCTTTCTGACAATTGGAGCAAGTGTAAAAAGTTAACAGATTTGAAAATTGCGAGGAACAATATCACCGGTAGCTTACCATTAGCATTTGGTGGTTCAAATTTAGTTGTATTTGATGTTTCGTCAAATAATTTAGTTGGGGAGATTCCAAAGGAGTTTGGGAAATTGAAGCAGATGTTGAGCCAAGATATTCCAGTGGAGATGACTAGGTTATTGCACTTGACAACTCTTGATTTGAGTGATGCTTTTAATGATATGTCTGCTTTGTTATATATTGACATATCCTACAATGAGCTTTATGGTCCTATCCCAAATAGCAAAGTTTTTGCAAATGCGACTATAGAAGTATTACGAGGTAACAAAGGTTTGTGTGGTAATGTTAAAGGATTGCAACATTGTGTAGATCTTTCTGGGGTGTTAAAGCATAAACCAAAAATGTCCCATAAACTTGTTCTTATAGTTGTACTCCCTCTTGTTGCATCGTTTTTACTTCTTTGTGCTTTCGTTCTATTCTTCATCATTTGTGATCGAAGAAAAAGAAAGCCAAAAGCAGAGGAGGAAAGGGATGATCAATCTTTATTTTCGATATCAAGTTTTGATGGGAGGGCAATGTACAACGAAATCATAAAAGCCACGAATGATTTTGACGTCGAGTATTGTATTGGAAAAGGAGGGTTTGGAGCAGTTTACAAAGTGAAAATGCAATCAGCTAATGTTGTAGCTGTAAAGAAACTTCACTCATTGTCGGAAATAGTTGACCGTAATGCTTTTGTGAATGAGGTGAAAGCATTGACTCAAATAAGGCATCGAAACATTGTGAAGCTTCATGGATTTTGTTCACATGCTCGAAATTCATTTTTGGTTTATGACTACCTCGAAAGGGATTTTGGTGCTGCTAAGATTTTGAAGCTAGACACATCAAACTGGAGTGCAGTCGCCGGAACATATGGATATATTGCACCAGAGTTTGCTTACACAATGAAGGTAACGGAAAAGTGTGATGTGTATAGCTTTGGAGTACTATCATTGGAAGTGATTAAAGGAAAGCATCCGGGTGACTACATTGATTCGCTGTTATCTCCATCAATTGAAGCATAAGCAACTTAACAAAAGCATGTTAGACGAGCGACTTCCA

Network for GWHGAAZE011167

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	34	85	1.40E-05
PF00560.34	LRR_1	258	280	2
PF07714.18	PK_Tyr_Ser-Thr	682	755	9.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.728
	SRR3591706	second leaf	0.090
	SRR3591707	mature leaf	0.033
	SRR3591708	Shoot apex	0.196
	SRR3591709	Stem	11.789
	SRR3591710	White floral bud	0.068
	SRR3591711	White flower	0.052
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.026
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.047
	SRR8316901	Third green stage	0.032
	SRR8316898	Complete white stage	0.125
	SRR8316899	Complete white stage	0.248
	SRR8316903	Complete white stage	0.184
	SRR8316902	Silver flowering stage	0.096
	SRR8316904	Silver flowering stage	0.240
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.029
	SRR8316908	Gold flowering stage	0.096
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.070
	CNS0095599	Silvery flower (diploied) 2	0.041
	CNS0095600	Silvery flower (diploied) 3	0.125
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.275
	CNS0095603	Golden flower (diploid) 3	0.193
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.032
	CNS0095612	Silvery flower (tetraploid) 3	0.014
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.054
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.001
	CRR073302	Leaf 3	0.022
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.032
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.031
	CRR073316	Gold flowering 2	0.113
	CRR073317	Gold flowering 3	0.196
	CRR073318	Tawny withering 1	2.148
	CRR073319	Tawny withering 2	2.370
	CRR073320	Tawny withering 3	3.030