Gene detail

Detail information of GWHGAAZE011031

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002281987.1	PREDICTED: phosphoacetylglucosamine mutase [Vitis vinifera]
Swissprot	tr\|P57750\|AGM1_ARATH	Phosphoacetylglucosamine mutase
trEMBL	tr\|D7TTG2\|D7TTG2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33942.3}
TAIR10	AT5G18070.1	phosphoglucosamine mutase-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	39676676	39683192	-
GWHAAZE00000003	mRNA	39676676	39683192	-
GWHAAZE00000003	exon	39683057	39683192	-
GWHAAZE00000003	exon	39682700	39682962	-
GWHAAZE00000003	exon	39681934	39682053	-
GWHAAZE00000003	exon	39680842	39680984	-
GWHAAZE00000003	exon	39680502	39680747	-
GWHAAZE00000003	exon	39680099	39680141	-
GWHAAZE00000003	exon	39678391	39678817	-
GWHAAZE00000003	exon	39677855	39678030	-
GWHAAZE00000003	exon	39677144	39677240	-
GWHAAZE00000003	exon	39676676	39676833	-
GWHAAZE00000003	CDS	39683057	39683192	-
GWHAAZE00000003	CDS	39682700	39682962	-
GWHAAZE00000003	CDS	39681934	39682053	-
GWHAAZE00000003	CDS	39680842	39680984	-
GWHAAZE00000003	CDS	39680502	39680747	-
GWHAAZE00000003	CDS	39680099	39680141	-
GWHAAZE00000003	CDS	39678391	39678817	-
GWHAAZE00000003	CDS	39677855	39678030	-
GWHAAZE00000003	CDS	39677144	39677240	-
GWHAAZE00000003	CDS	39676676	39676833	-

Transcript Sequence
>GWHTAAZE011043 ATGTTGATTAGAAGTGCAAGCATTGATACAGTCAACAGCAAAACCAATTCTCTATTTCTCTCTACCCGAAAGAAGGATGAAAGAACAGCAGCGAACAATCCTTCTCGAGTTTTCCTCTCGCTTCCACCTCCTCAAGGAGCTAAGCTATCCTATGGCACTTCGGGGTTCCGAGCTGATGCATCAATACTCCAATCGACGGTGTTTAGGGTTGGGATTTTGGCAGCTCTAAGATCACTGAAGACCCAAGGTGTGATCGGATTGATGATAACTGCTTCCCACAACGAAGTGTCCGATAATGGTGTCAAAATCGCAGACCCTAGTGGTGGAATGCTCACTCAGGAGTGGGAGCCTTTTGCTGATTCGCTCGCTAATGCTCCTGATCCCCAAGATCTTGTCGAGTTGGTAGTTGAATTTGTGAAGAAGGAAAACATTCAACTTAATGGAGCAGGGAAAGCTGAGATATTATTGGCAAGAGACACTAGGCCTAGTGGGGAATCTCTCCTTGAGGCTGCAAAACAAGGGATTAGTTCAATAATAGGAGCTGTTGCAATTGACATGGGAGTTCTAACAACTCCACAACTGCATTGGATGGTTCGTGCTACAAATAAGAAAACAAAAGCATCAGAACTTGATTATTTTGATCAGCTTTCAAGCTCTTTCAGGTGCTTGATAGACTTGATCCCCCAGAGAAACGCAAGCGATAATATGAGTGACAAATTGATTGTGGATGGGGCAAATGGTGTGGGTGGCGAAAAGCTTGTAGTTCTGAAGAAGATGTTAAATGGTTTAGATATAGAAATCCGGAATTCTGGTAAAGAAGGTATACTCAACGATGGAGTTGGTGCTGATTATGTACAGAAAGAGAAGGTTGTTCCTTGTGGATTTGGCCCCGCTGATGTTGGGACAAGGACTGGGTTCCTCTGCGGTGTCCCAAATACACTGCACTGTAAAAGTTTCAGGTGTGCAAGTTTGGATGGAGATGCTGATCGACTCATATATTTTACAGTGCAATCAAACAGTAACAACAAAATTAGCCTTGTTGACGGGGACAAGATATTGTCTTTGTTTGCTTTATTTGTCAATGAGCAACTACATATACTCAATGAGGCCAAAGATGAGAAAATAAGCAATTCTTATCGAGCATGCATTGGTGTTGTTCAGACAGCTTATGCCAATGGGGCATCCACAGATTACCTTAAACAATCGGGCCTAGAAGTGGTGTTTACTCCCACAGGAGTGAAATACTTGCACGAGAAAGCAGCTGAGTTTGATATTGGGATCTATTTTGAAGCAAATGGCCATGGAACCATCTTGTTCTCAGAACATTTCATAGGCTGGTTAGATGGTGTAGTTCATGAGCTTGCTTCAATATCCAAAGGTTCAGAACAGCATAAGGCTGCTTTGAGGCTATTGGCAGTTAGCAAGTTGATCAATCAGGCAGTGGGAGATGCTTTGAGTGGGTTGCTTTTAGTGGAGGTTATCTTACGACATATGGGATGGTCGGTCCACAGATGGAATGAGCTTTATCATGATCTCCCCAGCAGACAACTTAAAGTAAAGGTGGTCGACAGAACTGTTGTTACCACTGCGAATGCAGAAACTGTGGTTGTGAAGCCCCTTGGCATTCAAGAAGCCATCAATGCTGAAACCGCAAAATACGAAAGAGGCAGATGTTTTATACGACCATCTGGAACAGAGGATGTCATACGAGTATACGCAGAGGCAAGTACAGAGGAAGCATCAGATAAGCTTGCCAATTCTGTAGCTATAATTGTGGATCAGTTTCTTGGGTTCAATAGCAGATCTTGA

Network for GWHGAAZE011031

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02878.17	PGM_PMM_I	83	115	1.00E-05
PF02878.17	PGM_PMM_I	140	202	6.40E-06
PF02880.17	PGM_PMM_III	348	464	7.80E-09
PF00408.21	PGM_PMM_IV	518	589	1.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01836	PGM3	Metabolic pathways	map01100
K01836	PGM3	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0071704	biological_process	organic substance metabolic process
GO:0016868	molecular_function	intramolecular transferase activity, phosphotransferases
GO:0004610	molecular_function	phosphoacetylglucosamine mutase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.663
	SRR3591706	second leaf	11.689
	SRR3591707	mature leaf	10.896
	SRR3591708	Shoot apex	12.301
	SRR3591709	Stem	26.403
	SRR3591710	White floral bud	20.568
	SRR3591711	White flower	26.603
	SRR3591712	Green floral bud	25.709
	SRR3591713	Yellow flower	21.800
SRP173429	SRR8316895	Juvenile bud stage	13.706
	SRR8316896	Juvenile bud stage	23.361
	SRR8316897	Juvenile bud stage	8.477
	SRR8316894	Third green stage	10.309
	SRR8316900	Third green stage	32.290
	SRR8316901	Third green stage	27.910
	SRR8316898	Complete white stage	11.879
	SRR8316899	Complete white stage	31.398
	SRR8316903	Complete white stage	16.925
	SRR8316902	Silver flowering stage	10.754
	SRR8316904	Silver flowering stage	13.892
	SRR8316905	Silver flowering stage	5.059
	SRR8316906	Gold flowering stage	22.899
	SRR8316907	Gold flowering stage	22.644
	SRR8316908	Gold flowering stage	19.881
SRP132670	SRR6706286	Control	25.373
	SRR6706287	Light intensity 50%	25.748
	SRR6706288	Light intensity 20%	28.135
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.776
	CNS0095593	Slightly white alabastrum(diploid) 2	23.838
	CNS0095594	Slightly white alabastrum(diploid) 3	20.852
	CNS0095595	Whole white alabastrum(diploid) 2	20.836
	CNS0095596	Whole white alabastrum(diploid) 3	20.476
	CNS0095597	Whole white alabastrum(diploid) 4	18.377
	CNS0095598	Silvery flower (diploied) 1	15.688
	CNS0095599	Silvery flower (diploied) 2	15.572
	CNS0095600	Silvery flower (diploied) 3	24.546
	CNS0095601	Golden flower (diploid) 1	15.043
	CNS0095602	Golden flower (diploid) 2	20.100
	CNS0095603	Golden flower (diploid) 3	20.070
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.944
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.487
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.750
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.990
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.551
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.344
	CNS0095610	Silvery flower (tetraploid) 1	25.245
	CNS0095611	Silvery flower (tetraploid) 2	21.823
	CNS0095612	Silvery flower (tetraploid) 3	21.502
	CNS0095613	Golden flower (tetraploid) 1	12.407
	CNS0095614	Golden flower (tetraploid) 2	17.330
	CNS0095615	Golden flower (tetraploid) 3	11.967
CRA001975	CRR073297	Stem 1	20.221
	CRR073298	Stem 2	18.514
	CRR073299	Stem 3	21.223
	CRR073300	Leaf 1	22.912
	CRR073301	Leaf 2	22.680
	CRR073302	Leaf 3	21.426
	CRR073303	Juvenile bud 1	24.533
	CRR073304	Juvenile bud 2	22.643
	CRR073305	Juvenile bud 3	30.915
	CRR073306	Third green 1	12.584
	CRR073307	Third green 2	14.092
	CRR073308	Third green 3	11.017
	CRR073309	Second white 1	12.884
	CRR073310	Second white 2	15.283
	CRR073311	Second white 3	13.558
	CRR073312	Silver flowering 1	10.138
	CRR073313	Silver flowering 2	8.350
	CRR073314	Silver flowering 3	11.434
	CRR073315	Gold flowering 1	9.993
	CRR073316	Gold flowering 2	11.017
	CRR073317	Gold flowering 3	9.611
	CRR073318	Tawny withering 1	15.801
	CRR073319	Tawny withering 2	18.493
	CRR073320	Tawny withering 3	16.061