Detail information of GWHGAAZE010940


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14635.12.8151E-122unnamed protein product [Coffea canephora]
Swissprottr|Q9SAC0|ZCIS_ARATH1E-11215-cis-zeta-carotene isomerase, chloroplastic (Precursor)
trEMBLtr|A0A068V1H6|A0A068V1H6_COFCA1E-122Coffea canephora DH200=94 genomic scaffold, scaffold_90 {ECO:0000313|EMBL:CDP14635.1}
TAIR10AT1G10830.16E-9115-cis-zeta-carotene isomerase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene3572771735728899-
GWHAAZE00000003mRNA3572771735728899-
GWHAAZE00000003exon3572771735728052-
GWHAAZE00000003exon3572867235728899-
GWHAAZE00000003CDS3572867235728899-
GWHAAZE00000003CDS3572771735728052-
Transcript Sequence

Network for GWHGAAZE010940

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07298.12NnrU71782.60E-38
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K15744Z-ISO Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.470
SRR3591706second leaf4.632
SRR3591707mature leaf6.421
SRR3591708Shoot apex5.454
SRR3591709Stem4.060
SRR3591710White floral bud43.120
SRR3591711White flower33.261
SRR3591712Green floral bud15.003
SRR3591713Yellow flower24.468
SRP173429 SRR8316895Juvenile bud stage 3.557
SRR8316896Juvenile bud stage 4.611
SRR8316897Juvenile bud stage 2.119
SRR8316894Third green stage 2.131
SRR8316900Third green stage 11.082
SRR8316901Third green stage 11.760
SRR8316898Complete white stage 24.315
SRR8316899Complete white stage 15.442
SRR8316903Complete white stage 27.925
SRR8316902Silver flowering stage35.790
SRR8316904Silver flowering stage45.721
SRR8316905Silver flowering stage27.487
SRR8316906Gold flowering stage 86.026
SRR8316907Gold flowering stage 80.454
SRR8316908Gold flowering stage 66.644
SRP132670SRR6706286Control9.442
SRR6706287Light intensity 50%12.328
SRR6706288Light intensity 20%10.755
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.199
CNS0095593Slightly white alabastrum(diploid) 25.286
CNS0095594Slightly white alabastrum(diploid) 38.931
CNS0095595Whole white alabastrum(diploid) 27.349
CNS0095596Whole white alabastrum(diploid) 38.682
CNS0095597Whole white alabastrum(diploid) 46.954
CNS0095598Silvery flower (diploied) 114.372
CNS0095599Silvery flower (diploied) 225.620
CNS0095600Silvery flower (diploied) 345.956
CNS0095601Golden flower (diploid) 114.676
CNS0095602Golden flower (diploid) 226.631
CNS0095603Golden flower (diploid) 329.283
CNS0095604Slightly white alabastrum(tetraploid) 14.653
CNS0095605Slightly white alabastrum(tetraploid) 22.024
CNS0095606Slightly white alabastrum(tetraploid) 36.063
CNS0095607Whole white alabastrum(tetraploid) 12.766
CNS0095608Whole white alabastrum(tetraploid) 23.844
CNS0095609Whole white alabastrum(tetraploid) 37.597
CNS0095610Silvery flower (tetraploid) 120.849
CNS0095611Silvery flower (tetraploid) 226.293
CNS0095612Silvery flower (tetraploid) 336.174
CNS0095613Golden flower (tetraploid) 113.589
CNS0095614Golden flower (tetraploid) 220.578
CNS0095615Golden flower (tetraploid) 314.228
CRA001975CRR073297Stem 18.246
CRR073298Stem 26.754
CRR073299Stem 39.380
CRR073300Leaf 19.470
CRR073301Leaf 212.232
CRR073302Leaf 312.150
CRR073303Juvenile bud 118.298
CRR073304Juvenile bud 226.098
CRR073305Juvenile bud 313.551
CRR073306Third green 1152.290
CRR073307Third green 2115.944
CRR073308Third green 3121.445
CRR073309Second white 1157.351
CRR073310Second white 2134.542
CRR073311Second white 3133.214
CRR073312Silver flowering 1136.830
CRR073313Silver flowering 2104.986
CRR073314Silver flowering 3105.410
CRR073315Gold flowering 119.266
CRR073316Gold flowering 219.692
CRR073317Gold flowering 318.068
CRR073318Tawny withering 16.925
CRR073319Tawny withering 23.748
CRR073320Tawny withering 37.489