Gene detail

Detail information of GWHGAAZE010933

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010251899.1	2.9539E-110	PREDICTED: uncharacterized protein LOC104593637 [Nelumbo nucifera]
trEMBL	tr\|A0A067L028\|A0A067L028_JATCU	9E-103	Uncharacterized protein {ECO:0000313\|EMBL:KDP40593.1}
TAIR10	AT5G07900.1	2E-41	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	35578521	35579753	-
GWHAAZE00000003	mRNA	35578521	35579753	-
GWHAAZE00000003	exon	35578521	35579753	-
GWHAAZE00000003	CDS	35578521	35579753	-

Transcript Sequence
>GWHTAAZE010945 ATGGCAAATCCCACTCTGAAGAGATCACTATTCCTATCTTGTTTTCCCACCCAATTTCTCAGAAATATAATCACCCCACAATCCTCAACTATTTGTAGAAAACATTTGCTTAGTACAGTTTCAGATTCAGATAAATCATTGTCATCAGTGTCATCCTTCACAGTACAATACCTAATGAACACATGTGGGTTTCCGTTGGAAGATGCCCTTTCGGCTTCCAAAAAGTTGCAATTGAATGAAAACAAGTTACATAAACACCAATCTGTCATGGAACTTTTGAGATCTTTTCATTTCTGTGATACCCACGTCACCAAACTCCTCATTAAGTGCCCCAAGATCCTTCAAATGAAGGTGAATAATAATCTTAAGCCTAAATTAGAGTACCTCAGGGATAATGGGCTTGAGGGTCGGCTCCTCCCGGACCTAATTGTATCAAATCCCGAAATTTTGACTAGAAGCTTGAGTGGATTTGTAAAACCAAGATTGGAATTCCTTAAGAAATATTTACACACCAATGACAAAGTTTTCGGTGCTGTTAAACATACTTCTGGGCTTTGGAGATTTTATTTGAAGGGAATTATGGAGCGGAATATCGAATTGTTGTTAAGTGAAGGGGTAACTACTAGAAGTATAGAGAGATGGATTTTCTGGCAGCCGAGAACTTTGATGCAGAGGGTTGATAGAATTGTCTATGCAATTCGGACTGTCAAAGAGTTGGGGCTCGACCCTAGTTCTTTTACATGTGTACAAGCTATTCAAGTGTTGCTCTCAATCAGCCATTCAACATGGAATCAGAAAGCACAAAATTTTAAGGCTTTAGGATGGTCTGAGGAAATGATCTGGTCCGCGTTTAAGCGGTATTCATTGTGTTTTGCTTTGTCTGAGGAGAAAGTCAGGAGGGCAATGGATTTTTATGTGAACACGATGAAATTGAAGCCGGAGGTTATAGCAGCTCAGCCTAATCTTCTTTCATACGCAATGAATACTAGAATTCGCCCACGGTATAGTGTTATAAAGGTTTTGGAGTGTCGGAAGCTGCTTAAGAAGAAATTTAAGGTTTTTTGGGTATTTAGACTGACTGAGAAGGATTTCTTGGAAAAATTTGTGGACAAGCATTTGGACCAAATTCCAAACTTGTTGGAGGTATATCGTGGTACTATCGCGGTTGAGAAGATGGATCAATTAGAACAAAGTAAGTTAACCTCCTATGTGGAGATATGTGCAGTACAATGA

Network for GWHGAAZE010933

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	90	212	4.20E-12
PF02536.15	mTERF	194	365	4.70E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.668
	SRR3591706	second leaf	1.009
	SRR3591707	mature leaf	0.812
	SRR3591708	Shoot apex	1.208
	SRR3591709	Stem	2.021
	SRR3591710	White floral bud	2.093
	SRR3591711	White flower	1.971
	SRR3591712	Green floral bud	1.622
	SRR3591713	Yellow flower	2.454
SRP173429	SRR8316895	Juvenile bud stage	0.976
	SRR8316896	Juvenile bud stage	1.059
	SRR8316897	Juvenile bud stage	0.296
	SRR8316894	Third green stage	0.510
	SRR8316900	Third green stage	1.716
	SRR8316901	Third green stage	1.790
	SRR8316898	Complete white stage	0.298
	SRR8316899	Complete white stage	1.515
	SRR8316903	Complete white stage	0.847
	SRR8316902	Silver flowering stage	0.343
	SRR8316904	Silver flowering stage	0.538
	SRR8316905	Silver flowering stage	0.319
	SRR8316906	Gold flowering stage	1.010
	SRR8316907	Gold flowering stage	1.157
	SRR8316908	Gold flowering stage	1.034
SRP132670	SRR6706286	Control	0.508
	SRR6706287	Light intensity 50%	0.842
	SRR6706288	Light intensity 20%	0.594
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.308
	CNS0095593	Slightly white alabastrum(diploid) 2	1.296
	CNS0095594	Slightly white alabastrum(diploid) 3	1.488
	CNS0095595	Whole white alabastrum(diploid) 2	0.984
	CNS0095596	Whole white alabastrum(diploid) 3	0.578
	CNS0095597	Whole white alabastrum(diploid) 4	1.612
	CNS0095598	Silvery flower (diploied) 1	0.943
	CNS0095599	Silvery flower (diploied) 2	0.829
	CNS0095600	Silvery flower (diploied) 3	1.190
	CNS0095601	Golden flower (diploid) 1	1.525
	CNS0095602	Golden flower (diploid) 2	1.001
	CNS0095603	Golden flower (diploid) 3	0.907
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.099
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.750
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.605
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.867
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.558
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.806
	CNS0095610	Silvery flower (tetraploid) 1	0.268
	CNS0095611	Silvery flower (tetraploid) 2	0.365
	CNS0095612	Silvery flower (tetraploid) 3	0.193
	CNS0095613	Golden flower (tetraploid) 1	0.198
	CNS0095614	Golden flower (tetraploid) 2	0.141
	CNS0095615	Golden flower (tetraploid) 3	0.100
CRA001975	CRR073297	Stem 1	0.597
	CRR073298	Stem 2	0.397
	CRR073299	Stem 3	0.354
	CRR073300	Leaf 1	0.604
	CRR073301	Leaf 2	0.626
	CRR073302	Leaf 3	0.399
	CRR073303	Juvenile bud 1	0.300
	CRR073304	Juvenile bud 2	0.434
	CRR073305	Juvenile bud 3	0.197
	CRR073306	Third green 1	0.235
	CRR073307	Third green 2	0.067
	CRR073308	Third green 3	0.266
	CRR073309	Second white 1	0.267
	CRR073310	Second white 2	0.290
	CRR073311	Second white 3	0.072
	CRR073312	Silver flowering 1	0.188
	CRR073313	Silver flowering 2	0.205
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.088
	CRR073316	Gold flowering 2	0.333
	CRR073317	Gold flowering 3	0.049
	CRR073318	Tawny withering 1	0.163
	CRR073319	Tawny withering 2	0.196
	CRR073320	Tawny withering 3	0.098