Gene detail

Detail information of GWHGAAZE010861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010045993.1	5.1037E-50	PREDICTED: TMV resistance protein N-like [Eucalyptus grandis]
Swissprot	tr\|Q9SZ67\|WRK19_ARATH	1E-24	Probable WRKY transcription factor 19
trEMBL	tr\|A0A059CEK7\|A0A059CEK7_EUCGR	6E-41	Uncharacterized protein {ECO:0000313\|EMBL:KCW76360.1}
TAIR10	AT5G36930.2	7E-20	Disease resistance protein (TIR-NBS-LRR class) family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	28494488	28498199	-
GWHAAZE00000003	mRNA	28494488	28498199	-
GWHAAZE00000003	exon	28494488	28495103	-
GWHAAZE00000003	exon	28495293	28495360	-
GWHAAZE00000003	exon	28495817	28496113	-
GWHAAZE00000003	exon	28496343	28496530	-
GWHAAZE00000003	exon	28497938	28498199	-
GWHAAZE00000003	CDS	28497938	28498199	-
GWHAAZE00000003	CDS	28496343	28496530	-
GWHAAZE00000003	CDS	28495817	28496113	-
GWHAAZE00000003	CDS	28495293	28495360	-
GWHAAZE00000003	CDS	28494488	28495103	-

Transcript Sequence
>GWHTAAZE010873 ATGGTTGTTGAAAAGGTTTTGTTAGAGTTGAAGAAGAATTACAAGCATGTACCGGATAATGTGGTTGGAATGGATCATCACATACAAGAACTAATGGGATTACTAAATTTCAACTTTGATGGTGTACGAATTGTTGGAATCCATGGCATGGGAGGGATTGGAAAGACAACTATCGCCAAGGCTGTGTTCAACAAACTTTGTGATTACTTCCAATGTTGTTGCTTCATTGAAGATGTTCGAGAAAAGGCAAAACACCACAACGCAGAAGCAATCAATGTCCTTGTTCTCAGGTCTCTACTAAAAGTTGATGATGATAACAGGCTAAGGATGCATGATCAGCTAAGAGATCTTGGTAGACAAATTGTTCGTGAAGAAAATCTTTTTGATCTAGGGGAGCGAAGTAGGTTATGCTGTCATGAGGAAGCCCTGGATGTATTTGAGAGACACATGGGAACAAGAAAGGTTGCAGCTCTCCACTTCGAGTTTACTAAACCAAAATGGGGGTCTCGTCCCAACTGTTTTGTAGGAGAAGATTTTGAACAAGTTCAAAATCTGAGGTTTCTCAGCGTGATTAATGCAGATCTTGATGGAGATTTCAAACATGTTCTTTCTAATTTAAGATATCTTCGATGGCAAAGATGTTCAGGGAAGTTTAGGCCTACTAATTTTAATCTGAATAATCTTGTTACTCTTGATTTGTCAGGGAGTGAAATCACAAATGACTGGGTTGGTTGGCGTGAAATCAAGGCAAACAAATTGAAAGCTCTGAATATCTCGTTTTGCAGAGATTTAGCAAGAGTTCCTAGCCTTTCTGGGATTGATGGGCTTGAACAGTTAGAATTCTTGAATTACTTGAATGCAGCAGCTTGTGTATCCATTGAAAGATTACCGAATCTGTCAAAGTTAAAAAGGTTGAAAAAGTTACAGATCAAGAAGTGCGAGAAGCTAATTGAGTTTCAAGGCCTCGATATGTTGCAATCCTTGGAACATCTGAATATGAGTGACTGCAAATCTAGAGGAAGATCCGCTAGCCTGTCAAATATGATAAAAGAACTCGATCTTTCCAACTTAAAAAAATTGAAGAAATTAAAGATTGCGTGGTTAGAGAGTTTAACTGAGATTAAAGGGCTCGAGGGAATGAAATACTTAGAGCTATTGGACGTCGAAGGATGCAAGTCACTTGAAAAATTACCTGCTCTCTCAAACAAAAAGAAATTAAAAATAGTAATGCTATTCTCTTCTGTGAAACTTGATGAGATGCCGTGCCTTGAGGACCGGAAGACCTTAAAATTATTGGACATTTTCAGATGCCATTGGCTTGACAACTTTTCAACTCTGGCAGAATATTTAAGAGTTCTTATTCAGGCTCTTATTGGTATATCTTTTGTAGTTCTGTATCTTCAATTGATTATACGGATGGACTCCACGTGA

Network for GWHGAAZE010861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	27	76	4.60E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.201
	SRR3591706	second leaf	1.260
	SRR3591707	mature leaf	0.754
	SRR3591708	Shoot apex	0.784
	SRR3591709	Stem	0.944
	SRR3591710	White floral bud	0.240
	SRR3591711	White flower	0.216
	SRR3591712	Green floral bud	0.149
	SRR3591713	Yellow flower	0.023
SRP173429	SRR8316895	Juvenile bud stage	0.164
	SRR8316896	Juvenile bud stage	0.200
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.253
	SRR8316900	Third green stage	0.386
	SRR8316901	Third green stage	0.302
	SRR8316898	Complete white stage	0.126
	SRR8316899	Complete white stage	1.133
	SRR8316903	Complete white stage	0.153
	SRR8316902	Silver flowering stage	0.215
	SRR8316904	Silver flowering stage	0.291
	SRR8316905	Silver flowering stage	0.082
	SRR8316906	Gold flowering stage	0.111
	SRR8316907	Gold flowering stage	0.141
	SRR8316908	Gold flowering stage	0.128
SRP132670	SRR6706286	Control	0.132
	SRR6706287	Light intensity 50%	0.062
	SRR6706288	Light intensity 20%	0.082
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.145
	CNS0095593	Slightly white alabastrum(diploid) 2	0.262
	CNS0095594	Slightly white alabastrum(diploid) 3	0.391
	CNS0095595	Whole white alabastrum(diploid) 2	0.166
	CNS0095596	Whole white alabastrum(diploid) 3	0.436
	CNS0095597	Whole white alabastrum(diploid) 4	0.438
	CNS0095598	Silvery flower (diploied) 1	0.108
	CNS0095599	Silvery flower (diploied) 2	0.085
	CNS0095600	Silvery flower (diploied) 3	0.111
	CNS0095601	Golden flower (diploid) 1	0.023
	CNS0095602	Golden flower (diploid) 2	0.160
	CNS0095603	Golden flower (diploid) 3	0.052
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.254
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.299
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.140
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.308
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.511
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.017
	CNS0095610	Silvery flower (tetraploid) 1	0.020
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.271
	CNS0095613	Golden flower (tetraploid) 1	0.078
	CNS0095614	Golden flower (tetraploid) 2	0.013
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.223
	CRR073298	Stem 2	0.172
	CRR073299	Stem 3	0.109
	CRR073300	Leaf 1	0.427
	CRR073301	Leaf 2	0.532
	CRR073302	Leaf 3	0.010
	CRR073303	Juvenile bud 1	0.039
	CRR073304	Juvenile bud 2	0.208
	CRR073305	Juvenile bud 3	0.028
	CRR073306	Third green 1	0.010
	CRR073307	Third green 2	0.015
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.018
	CRR073316	Gold flowering 2	0.032
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.179
	CRR073319	Tawny withering 2	0.502
	CRR073320	Tawny withering 3	0.200