Gene detail

Detail information of GWHGAAZE010854

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002268942.2	7.0287E-173	PREDICTED: 2-isopropylmalate synthase A-like [Vitis vinifera]
Swissprot	tr\|O04973\|LEU1A_SOLPN	2E-172	2-isopropylmalate synthase A
trEMBL	tr\|B5LAV3\|B5LAV3_CAPAN	1E-172	Putative isopropylmalate synthase {ECO:0000313\|EMBL:ACF17660.1}
TAIR10	AT1G74040.1	5E-136	2-isopropylmalate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	27612034	27615559	-
GWHAAZE00000003	mRNA	27612034	27615559	-
GWHAAZE00000003	exon	27612034	27612114	-
GWHAAZE00000003	exon	27612197	27612410	-
GWHAAZE00000003	exon	27613814	27614082	-
GWHAAZE00000003	exon	27615137	27615559	-
GWHAAZE00000003	CDS	27615137	27615559	-
GWHAAZE00000003	CDS	27613814	27614082	-
GWHAAZE00000003	CDS	27612197	27612410	-
GWHAAZE00000003	CDS	27612034	27612114	-

Transcript Sequence
>GWHTAAZE010866 ATGGCGTCAATTTCTCTTTCTCTAAACCCTCACCGCCATTTCTCTTCATCCACCACCACCACCACCACCACTTCCTCATTCGCCTCCTCAACCAATCCATTTCGCAATCTATTTCAATTCCACTCCACAAAACCAACCATTCTTCAATTCACCACCACTACCAGAATTAGCTGCTGTTCTTTGTCTGCTCCTCCTCGGCTACGGCCCGAATACGTCCCCAACCGAATCTCCGATCCAAACTATGTCAGAATCTTCGATACGACTCTCAGGGACGGCGAGCAGTCTCCGGGTGCCACCATGACCACCAAGGAGAAGCTGGATATAGCTCGCCAGCTCGCCAAGCTCGGCGTTGATATAATTGAGGCTGGGTTTCCTGCTTCGTCGGAGGCGGACCTCGAGGCCGTCAAGTTGATTGCTCAGCAGGTTGGCAATGCTGTCACAGAGGATGGTCACGTGCCAGTCATTTGCGGACTGGCAAGGTGTAACAAGAACGACATTGACATGGCTTGGGAGGCCGTGAAGCATGCTAAGAAGCCAAGAATACACACATTTATTGCAACTAGTGAGATTCATATGAAGTATAAGCTGAAGAAGTCCAAGGAGGAGGTAGTTGAAAGGGCAAGGAGTATGGTCAGTTATGCTAGGAGTTTGGGTTGCCAAGATGTTGAGTTCAGCCCTGAAGATGCCGGAAGATCTGAAAGGGAATTTCTGTATCAGATTCTCGGGGAAGTTATTAAAGCTGGGGCTACAACCCTTAACATCCCTGATACTGTTGGCTATACTATGCCTAATGAATTTGGGCAGTTGATTGCTGACATAAAATCCAACACCCCTGGAATTGAAAATGTCATCATTTCGACTCACTGCCAGAATGATCTTGGACTTTCTACTGCCAATACTTTAGCGGGGGCATGTGCAGGCGCAAGACAAGTAGAAGTAACAATCAATGGAATTGGCGAGAGAGCTGGTAATGCTTCTCTGGAAGAG

Network for GWHGAAZE010854

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00682.20	HMGL-like	82	329	7.80E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01649	leuA, IMS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Pyruvate metabolism	map00620
		Valine, leucine and isoleucine biosynthesis	map00290

Gene Ontology

GO term	Ontology	Name
GO:0019752	biological_process	carboxylic acid metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.584
	SRR3591706	second leaf	5.775
	SRR3591707	mature leaf	3.060
	SRR3591708	Shoot apex	10.785
	SRR3591709	Stem	3.187
	SRR3591710	White floral bud	3.390
	SRR3591711	White flower	10.036
	SRR3591712	Green floral bud	6.463
	SRR3591713	Yellow flower	11.350
SRP173429	SRR8316895	Juvenile bud stage	8.475
	SRR8316896	Juvenile bud stage	12.096
	SRR8316897	Juvenile bud stage	5.079
	SRR8316894	Third green stage	4.312
	SRR8316900	Third green stage	16.388
	SRR8316901	Third green stage	10.024
	SRR8316898	Complete white stage	1.696
	SRR8316899	Complete white stage	11.770
	SRR8316903	Complete white stage	4.131
	SRR8316902	Silver flowering stage	4.198
	SRR8316904	Silver flowering stage	3.755
	SRR8316905	Silver flowering stage	2.165
	SRR8316906	Gold flowering stage	16.091
	SRR8316907	Gold flowering stage	8.696
	SRR8316908	Gold flowering stage	19.450
SRP132670	SRR6706286	Control	18.822
	SRR6706287	Light intensity 50%	17.782
	SRR6706288	Light intensity 20%	18.382
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.027
	CNS0095593	Slightly white alabastrum(diploid) 2	3.848
	CNS0095594	Slightly white alabastrum(diploid) 3	5.334
	CNS0095595	Whole white alabastrum(diploid) 2	4.399
	CNS0095596	Whole white alabastrum(diploid) 3	3.086
	CNS0095597	Whole white alabastrum(diploid) 4	3.582
	CNS0095598	Silvery flower (diploied) 1	7.866
	CNS0095599	Silvery flower (diploied) 2	8.313
	CNS0095600	Silvery flower (diploied) 3	11.844
	CNS0095601	Golden flower (diploid) 1	5.172
	CNS0095602	Golden flower (diploid) 2	22.262
	CNS0095603	Golden flower (diploid) 3	19.556
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.616
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.081
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.340
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.144
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.620
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.478
	CNS0095610	Silvery flower (tetraploid) 1	12.941
	CNS0095611	Silvery flower (tetraploid) 2	12.690
	CNS0095612	Silvery flower (tetraploid) 3	8.729
	CNS0095613	Golden flower (tetraploid) 1	11.495
	CNS0095614	Golden flower (tetraploid) 2	25.820
	CNS0095615	Golden flower (tetraploid) 3	32.306
CRA001975	CRR073297	Stem 1	14.882
	CRR073298	Stem 2	16.501
	CRR073299	Stem 3	17.415
	CRR073300	Leaf 1	17.136
	CRR073301	Leaf 2	12.982
	CRR073302	Leaf 3	13.288
	CRR073303	Juvenile bud 1	10.370
	CRR073304	Juvenile bud 2	10.845
	CRR073305	Juvenile bud 3	18.913
	CRR073306	Third green 1	3.459
	CRR073307	Third green 2	1.902
	CRR073308	Third green 3	2.782
	CRR073309	Second white 1	6.672
	CRR073310	Second white 2	4.636
	CRR073311	Second white 3	4.330
	CRR073312	Silver flowering 1	10.197
	CRR073313	Silver flowering 2	12.034
	CRR073314	Silver flowering 3	9.246
	CRR073315	Gold flowering 1	4.476
	CRR073316	Gold flowering 2	16.358
	CRR073317	Gold flowering 3	8.794
	CRR073318	Tawny withering 1	10.306
	CRR073319	Tawny withering 2	6.800
	CRR073320	Tawny withering 3	10.893