Gene detail

Detail information of GWHGAAZE010823

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010030332.1	0	PREDICTED: LOW QUALITY PROTEIN: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Eucalyptus grandis]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	8E-149	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|F6HV81\|F6HV81_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58599.1}
TAIR10	AT4G08850.1	7E-119	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	26590704	26592788	-
GWHAAZE00000003	mRNA	26590704	26592788	-
GWHAAZE00000003	exon	26590704	26591056	-
GWHAAZE00000003	exon	26591225	26592788	-
GWHAAZE00000003	CDS	26591225	26592788	-
GWHAAZE00000003	CDS	26590704	26591056	-

Transcript Sequence
>GWHTAAZE010835 ATTGTTACTTCTATATCATGCCCTCAAAATCCTTATTTCTATGGTGAAGTTCGTATCGATGAGCTTAATTTGCCTTCATATCAAAACCTTGAAATCCTTAATCTTAGCAATTGTGCACTTCAAGGAACCATTCCATATGAAATTGGTAGGCTTTCTAAACTGACCAAACTTTCTCTTTCTCGCAATTCTCTTTCAGGTAACCTACCCTTTTCACTGGCCAACCTCACCAGCCTAACATGGCTTGATCTTAATAGCAACTCTTTTTCTGGTCCAATCCCTTCATCTGTTGGTTTTATGGCCCTTTTAACTTGCTTGGACCTTTCAGGAAGTTGTCTCAATGGGTCCATCCCATCCGAAATAGGAAATCTAACAAATCTTTCATTCTTAGACCTTGGTGACAACAACTTTTCAGGTCCAATTCCTTCATCGATCTGTGTCTTAACCCATTTAACCTTCTTGGACCTTTCTAGAAATCAACTCACTGGGTTCATTCCATTAGAAATATGGAACCTTAGCAATCTCATTTATCTACTCCTTGAGTGGAACAACCTTTCGGGTGCTATCCCTTCAACTATGGGACTCTTGACTAATTTAACACGTCTGGACCTTTCTCGCAATTCTTTTAATGGCACCATACCAACTAATCTTTCTTACTTGTCAAACTTAAACTACATTGATCTCTCCAACAATAAACTTGTTGGCTCTGTCCCCACCAACCTATGGGAACTGTGTTCCTCCTCAGAAGTTCAGTTGTTGGGAAATGAGCAGCTAAAGGGCAACCTCAACTGCCAATTAGAAATGAAGGACCAAGACAAGAGGAGGAGTAAAGATAGTCTCTTTGTCCCCATTATTATTATTATTTTTAATCCTGGGACCATTTTACTTGCCATAGTGATGATCCTTGGTGCCCATAGGTTTGTTTCTTGGCGTAAGGCTGTTAAAAACAAAAGCGTGTTAGTAACAATGAAGCATGGAAATATGTGCTCCATATGGAATTATGATGGCACAATTGCATACGAAGACATCATCAGATCAACAAATGACTTTGATATCGAACATTGCATTGGGACTGGCGGTTATGGTAGCGTTTACAGGGCTCAGCTACCATGTGGCAAAGTAGTTGCCTTAAAGAAACTTCACCGTTTTGAAGCCGAGGAGCCAACTTTCGACAAGAGCTTCAAGAATGAGGTTCAAGTGTTATCAAATATAAGGCATAGAAACATTGTCAAGCTTTACGGGTTCTGTTTGCACAACCGGTGCATGTTTCTGGTTTATGAATACATGGAAAGGGGAAGCTTATTTTGTGCCCTAAGAGACGATGCCGAGGCTGTTGAATTGGATTGGGTTAAAAGAGTGAGCATCGTTAAAGGCATAGCAAATGCTTTGTCTTACATGCATCACGATTGTATTCCACCTATTGCTCATCGAGACATTTCAAGTAATAACATTCTCTTGAACTCAAAACTAAATGCATTTGTAGCCGACTTTGGTGCAGCTAGATTTTTATTTCCCGATTCATCCAACCAAACTTTAATTGCAGGCACCTACGGATATATTGCTCCAGAGCTTGCCTACACCATGGTGGTGACAGAAAAATGCGATGTATATAGCTTTGGCGTTGTGGCGCTTGAAATAATAATGGGAAAGCATCCGGGAGATCTCCTCTCATCATTAACGTCTCCGTCTACAGAAAATCCAACAGTGAATGATGTGTTGGATCCTCGGCTCTCACATCCAAAGGATCGATTAGTTGAATGGGACATTATTATGGTTATAAGGTTGGCATTTTCATGCTTAAGTTCTAATCCCAAATCACGTCCTACAATGCAAAGCGTGTCACAAGAGTTTTTAGTTCGTAGGATGCCACTACCCAAACCTATTCATTTAATTCCATTGCTAGAGCTACGAAATCTTTGA

Network for GWHGAAZE010823

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	29	87	1.90E-07
PF00560.34	LRR_1	149	171	1.5
PF00069.26	Pkinase	351	614	2.50E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.154
	SRR3591707	mature leaf	0.582
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.101
	SRR3591710	White floral bud	0.440
	SRR3591711	White flower	1.070
	SRR3591712	Green floral bud	0.549
	SRR3591713	Yellow flower	0.143
SRP173429	SRR8316895	Juvenile bud stage	0.479
	SRR8316896	Juvenile bud stage	0.153
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.123
	SRR8316900	Third green stage	0.104
	SRR8316901	Third green stage	0.037
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.354
	SRR8316903	Complete white stage	0.048
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.073
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.109
	SRR6706287	Light intensity 50%	0.161
	SRR6706288	Light intensity 20%	0.048
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.442
	CNS0095593	Slightly white alabastrum(diploid) 2	0.491
	CNS0095594	Slightly white alabastrum(diploid) 3	0.437
	CNS0095595	Whole white alabastrum(diploid) 2	0.283
	CNS0095596	Whole white alabastrum(diploid) 3	0.155
	CNS0095597	Whole white alabastrum(diploid) 4	0.103
	CNS0095598	Silvery flower (diploied) 1	0.562
	CNS0095599	Silvery flower (diploied) 2	0.610
	CNS0095600	Silvery flower (diploied) 3	0.126
	CNS0095601	Golden flower (diploid) 1	0.346
	CNS0095602	Golden flower (diploid) 2	0.314
	CNS0095603	Golden flower (diploid) 3	0.201
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.019
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.103
	CRR073298	Stem 2	0.129
	CRR073299	Stem 3	0.009
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.022
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.161
	CRR073317	Gold flowering 3	0.022
	CRR073318	Tawny withering 1	0.134
	CRR073319	Tawny withering 2	0.138
	CRR073320	Tawny withering 3	0.000