Gene detail

Detail information of GWHGAAZE010773

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AID55388.1	0	glycoside hydrolase family 9 B3 [Gossypium hirsutum]
Swissprot	tr\|Q9C9H5\|GUN9_ARATH	0	Endoglucanase 9 (Precursor)
trEMBL	tr\|A0A068EWK0\|A0A068EWK0_GOSHI	0	Endoglucanase {ECO:0000256\|RuleBase:RU361166}
TAIR10	AT1G71380.1	2E-174	cellulase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	24213346	24215677	-
GWHAAZE00000003	mRNA	24213346	24215677	-
GWHAAZE00000003	exon	24215523	24215677	-
GWHAAZE00000003	exon	24214711	24215214	-
GWHAAZE00000003	exon	24214347	24214496	-
GWHAAZE00000003	exon	24213815	24213979	-
GWHAAZE00000003	exon	24213346	24213678	-
GWHAAZE00000003	five_prime_UTR	24215643	24215677	-
GWHAAZE00000003	CDS	24215523	24215642	-
GWHAAZE00000003	CDS	24214711	24215214	-
GWHAAZE00000003	CDS	24214347	24214496	-
GWHAAZE00000003	CDS	24213815	24213979	-
GWHAAZE00000003	CDS	24213346	24213678	-

Transcript Sequence
>GWHTAAZE010785 GGGTAAATGTTCAAGGTGCTACAAACCCAAATTACATGGATGCCCTTTCAAAGTCCATCCTATTCTTTCAGGGCCAGAGATCAGGCAAACTCCCCAATTCCCAATCCATCTCTTGGAGGTCCAATTCTGGCCTTTTGGATGGCTCTCAAGCCAAAGTTGATTTGACAGGTGGGTACTACGATGCAGGGGACAACGTAAAATTCAACTTTCCAATGGCCTACACCACCACAATGCTGTCATGGGGCACCCTAGAACACGGCAAAAAAATGGGCCCCGAGTTAGCAAACGCTAGGGCTGCGATCAAGTGGGCCACGGACTACCTACTAAAATGTGCCAGGGCCACGCCTGGTAAGCTCTATGTTGGGGTAGGTGACCCTAATGCAGACCATAAGTGTTGGGAGAGGCCGGAGGATATGGACACGGTTCGGACTGTATATTCTGTCTCGGCTAGCAATCCGGGCTCGGATGTGGCAGGGGAAACGGCTGCTGCATTAGCGGCCGCTTCTTTGGTTTTTCGGATAGTTGATCCAACATACTCGAAATTGCTGTTGAGGACAGCAAAGAGCGTGTTTCAGTTTGCAACTCAGTATAGAGGTTCTTATAGTGACTCACTTGGCTCTGCTGTTTGCCCATATTATTGTTCCTATTCTGGATATAAGGATGAATTGTTGTGGGGAGCGGCATGGCTTTACAAAGCGACAACTGATGCTTCATACATTAGTTTTATAAATTCTTTGGGAGCAAATGATGATACCGACATATTCAGTTGGGACAACAAATATGCTGGTGCTCGAGTTCTTTTATCAAGGGGGGGTCTAATGTACAAGCTAAGTGCAAGTAATCTACAATATGTGACATCCATAACTTTCTTGCTTTCCACTTACGGTAAATACATGGCCTCCGCAAAGCACACCTTTAATTGCGGAAATCTTGCGGTTACCTCAAACACTCTAAGAACTCTTGCAAAGAAACAGATGGACTATATTTTAGGAGTGAATCCAATGCAAAAGTCATACATGGTAGGATATGGTACAAATTATCCTAGAAGAATTCACCATAGAGGATCATCGTTGCCCTCGGTGAAAAGCCACCCTCAATCCATCCGTTGTGAGGACGGTTTTCAACCCTACTATTACACATCAAATGCTAACCCTAACATTTTGACCGGAGCAATCGTGGGAGGTCCAGACCAGAACGACTTCTTCGCGGATGATCGGACAGACTACAGCCACTCGGAGCCGGCCACTTACATCAATGGTGCCATAGTTGGATCTTTAGCATACTTAGCTGGGAGCTACAAAAGTTGA

Network for GWHGAAZE010773

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.20	Glyco_hydro_9	2	257	3.10E-90
PF00759.20	Glyco_hydro_9	258	413	1.10E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01179	E3.2.1.4	Metabolic pathways	map01100
		Starch and sucrose metabolism	map00500
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.199
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.105
	SRR3591711	White flower	0.490
	SRR3591712	Green floral bud	0.020
	SRR3591713	Yellow flower	0.079
SRP173429	SRR8316895	Juvenile bud stage	2.131
	SRR8316896	Juvenile bud stage	1.090
	SRR8316897	Juvenile bud stage	0.394
	SRR8316894	Third green stage	0.218
	SRR8316900	Third green stage	0.602
	SRR8316901	Third green stage	0.740
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.598
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.708
	SRR8316904	Silver flowering stage	0.125
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.521
	SRR8316907	Gold flowering stage	2.562
	SRR8316908	Gold flowering stage	0.062
SRP132670	SRR6706286	Control	0.424
	SRR6706287	Light intensity 50%	0.201
	SRR6706288	Light intensity 20%	0.275
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.679
	CNS0095593	Slightly white alabastrum(diploid) 2	0.821
	CNS0095594	Slightly white alabastrum(diploid) 3	0.678
	CNS0095595	Whole white alabastrum(diploid) 2	1.084
	CNS0095596	Whole white alabastrum(diploid) 3	0.994
	CNS0095597	Whole white alabastrum(diploid) 4	0.511
	CNS0095598	Silvery flower (diploied) 1	0.178
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.107
	CNS0095601	Golden flower (diploid) 1	0.309
	CNS0095602	Golden flower (diploid) 2	0.144
	CNS0095603	Golden flower (diploid) 3	0.285
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.466
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.350
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.462
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.102
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.084
	CNS0095610	Silvery flower (tetraploid) 1	0.703
	CNS0095611	Silvery flower (tetraploid) 2	0.045
	CNS0095612	Silvery flower (tetraploid) 3	0.108
	CNS0095613	Golden flower (tetraploid) 1	0.092
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.950
	CRR073298	Stem 2	0.574
	CRR073299	Stem 3	3.000
	CRR073300	Leaf 1	0.250
	CRR073301	Leaf 2	0.733
	CRR073302	Leaf 3	0.387
	CRR073303	Juvenile bud 1	0.250
	CRR073304	Juvenile bud 2	0.043
	CRR073305	Juvenile bud 3	0.098
	CRR073306	Third green 1	0.105
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.116
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.066
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.039
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.243
	CRR073319	Tawny withering 2	0.032
	CRR073320	Tawny withering 3	0.117