Gene detail

Detail information of GWHGAAZE010757

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266909.1	0	PREDICTED: eukaryotic translation initiation factor 3 subunit H [Vitis vinifera]
Swissprot	tr\|Q9C5Z2\|EIF3H_ARATH	0	Eukaryotic translation initiation factor 3 subunit H {ECO:0000255\|HAMAP-Rule:MF_03007}
trEMBL	tr\|D7U9M6\|D7U9M6_VITVI	0	Eukaryotic translation initiation factor 3 subunit H {ECO:0000256\|HAMAP-Rule:MF_03007}
TAIR10	AT1G10840.1	6E-161	translation initiation factor 3 subunit H1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	23817603	23825470	+
GWHAAZE00000003	mRNA	23817603	23825470	+
GWHAAZE00000003	exon	23817603	23817612	+
GWHAAZE00000003	exon	23817707	23817789	+
GWHAAZE00000003	exon	23820367	23820483	+
GWHAAZE00000003	exon	23820599	23820702	+
GWHAAZE00000003	exon	23822552	23822618	+
GWHAAZE00000003	exon	23822805	23822938	+
GWHAAZE00000003	exon	23823031	23823079	+
GWHAAZE00000003	exon	23823389	23823460	+
GWHAAZE00000003	exon	23823550	23823651	+
GWHAAZE00000003	exon	23823781	23823848	+
GWHAAZE00000003	exon	23824792	23824944	+
GWHAAZE00000003	exon	23825449	23825470	+
GWHAAZE00000003	CDS	23817603	23817612	+
GWHAAZE00000003	CDS	23817707	23817789	+
GWHAAZE00000003	CDS	23820367	23820483	+
GWHAAZE00000003	CDS	23820599	23820702	+
GWHAAZE00000003	CDS	23822552	23822618	+
GWHAAZE00000003	CDS	23822805	23822938	+
GWHAAZE00000003	CDS	23823031	23823079	+
GWHAAZE00000003	CDS	23823389	23823460	+
GWHAAZE00000003	CDS	23823550	23823651	+
GWHAAZE00000003	CDS	23823781	23823848	+
GWHAAZE00000003	CDS	23824792	23824944	+
GWHAAZE00000003	CDS	23825449	23825470	+

Transcript Sequence
>GWHTAAZE010769 ATGGCAACCACAACAGCTCCTCGTTCTTTTCTACAAGTGGCTTCTACAGAGGAAGTTGTTTCTCCTCTCAGAGTTGTCCAGATTGAGGGACTGGTTATATTAAAGATTATCAAACACTGCAAAGAATTTTCACCAGCTCTTGTCACAGGTCAACTTCTTGGGTTAGATGTTGGCTCTGTTCTTGAAGTAACTAACTGTTTCCCATTCCCGATCCGGGAGGAAGATGAGGAAATTGAAGCAGATGGCGCTAATTATCAGCTTGAGATGATGAGATGCTTGAGAGAGGTCAATGTTGACAACAACACTGTTGGATGGTACCAATCAACTTTATTGGGTTCTTTCCAGACAGTGGAACTGATCGAGACCTTTATGAATTACCAGGAGAATATAAGGCGGTGCGTATGCATCATTTATGATCCATCAAAGTCCAATCAGGGTGTCTTAGCTTTGAAGGCCTTGAAGCTTTCTGATTCGTTTATGGATCTTTACCGCTCCAATAATTTTACGGGCGAGAAATTGCGAGAGAAAAATCTCTCATGGGTGGACATCTTTGAAGAGATACCGATAAAGGTCTCAAACTCTGCTCTTATCAGCGCCTTTATGACTGAACTAGAAGCTGACACACCAGTAACCCAATGCGATTATGATAGGTTACAATTGTCAACCAATCCATTTATGGAGAGGAATGTTGAATTTCTGATTGAGTGCATGGATGACTTGTCAATGGAACAGCAAAAGTTCCAATTTTACTATCGCAACTTGTCACGCCAGCAAGCCCAACAGCAAGCATGGCTGCAGAAGAGAAGGTCTGAGAACATGGCACGTAAGGCTGCAGGAGAAGAGCCATTGCCGGAGGAGGATCCCTCAAATCCCATATTTAAGCCACTCCCCGAGCCATCACGCCTCGATAGCTTTCTCATAACCAATCAAATTTCCAACTACTGCAACCAAATTAATGGGATAGCACATCGTTCACCATAG

Network for GWHGAAZE010757

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.22	JAB	24	127	1.20E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
K03247	EIF3H	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0005852	cellular_component	eukaryotic translation initiation factor 3 complex
GO:0005515	molecular_function	protein binding
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.781
	SRR3591706	second leaf	36.952
	SRR3591707	mature leaf	20.609
	SRR3591708	Shoot apex	64.757
	SRR3591709	Stem	33.700
	SRR3591710	White floral bud	40.147
	SRR3591711	White flower	49.954
	SRR3591712	Green floral bud	52.494
	SRR3591713	Yellow flower	40.904
SRP173429	SRR8316895	Juvenile bud stage	22.446
	SRR8316896	Juvenile bud stage	33.799
	SRR8316897	Juvenile bud stage	26.492
	SRR8316894	Third green stage	13.635
	SRR8316900	Third green stage	41.390
	SRR8316901	Third green stage	36.258
	SRR8316898	Complete white stage	13.012
	SRR8316899	Complete white stage	35.563
	SRR8316903	Complete white stage	21.443
	SRR8316902	Silver flowering stage	14.229
	SRR8316904	Silver flowering stage	20.601
	SRR8316905	Silver flowering stage	10.047
	SRR8316906	Gold flowering stage	29.867
	SRR8316907	Gold flowering stage	34.349
	SRR8316908	Gold flowering stage	57.835
SRP132670	SRR6706286	Control	11.213
	SRR6706287	Light intensity 50%	14.409
	SRR6706288	Light intensity 20%	16.207
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.093
	CNS0095593	Slightly white alabastrum(diploid) 2	30.826
	CNS0095594	Slightly white alabastrum(diploid) 3	19.874
	CNS0095595	Whole white alabastrum(diploid) 2	23.559
	CNS0095596	Whole white alabastrum(diploid) 3	25.005
	CNS0095597	Whole white alabastrum(diploid) 4	16.346
	CNS0095598	Silvery flower (diploied) 1	18.910
	CNS0095599	Silvery flower (diploied) 2	17.726
	CNS0095600	Silvery flower (diploied) 3	25.762
	CNS0095601	Golden flower (diploid) 1	14.535
	CNS0095602	Golden flower (diploid) 2	21.729
	CNS0095603	Golden flower (diploid) 3	22.952
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.453
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.777
	CNS0095606	Slightly white alabastrum(tetraploid) 3	61.239
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.722
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.536
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.863
	CNS0095610	Silvery flower (tetraploid) 1	40.505
	CNS0095611	Silvery flower (tetraploid) 2	40.916
	CNS0095612	Silvery flower (tetraploid) 3	34.461
	CNS0095613	Golden flower (tetraploid) 1	26.966
	CNS0095614	Golden flower (tetraploid) 2	38.157
	CNS0095615	Golden flower (tetraploid) 3	32.063
CRA001975	CRR073297	Stem 1	23.190
	CRR073298	Stem 2	20.548
	CRR073299	Stem 3	24.232
	CRR073300	Leaf 1	21.433
	CRR073301	Leaf 2	18.599
	CRR073302	Leaf 3	23.032
	CRR073303	Juvenile bud 1	22.399
	CRR073304	Juvenile bud 2	17.976
	CRR073305	Juvenile bud 3	23.322
	CRR073306	Third green 1	15.401
	CRR073307	Third green 2	7.741
	CRR073308	Third green 3	11.733
	CRR073309	Second white 1	19.149
	CRR073310	Second white 2	20.706
	CRR073311	Second white 3	18.914
	CRR073312	Silver flowering 1	18.397
	CRR073313	Silver flowering 2	31.078
	CRR073314	Silver flowering 3	26.179
	CRR073315	Gold flowering 1	8.801
	CRR073316	Gold flowering 2	18.329
	CRR073317	Gold flowering 3	11.948
	CRR073318	Tawny withering 1	14.661
	CRR073319	Tawny withering 2	20.940
	CRR073320	Tawny withering 3	25.035