Gene detail

Detail information of GWHGAAZE010754

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266909.1	0	PREDICTED: eukaryotic translation initiation factor 3 subunit H [Vitis vinifera]
Swissprot	tr\|Q9C5Z2\|EIF3H_ARATH	0	Eukaryotic translation initiation factor 3 subunit H {ECO:0000255\|HAMAP-Rule:MF_03007}
trEMBL	tr\|D7U9M6\|D7U9M6_VITVI	0	Eukaryotic translation initiation factor 3 subunit H {ECO:0000256\|HAMAP-Rule:MF_03007}
TAIR10	AT1G10840.1	4E-169	translation initiation factor 3 subunit H1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	23547357	23556600	+
GWHAAZE00000003	mRNA	23547357	23556600	+
GWHAAZE00000003	exon	23547357	23547366	+
GWHAAZE00000003	exon	23547463	23547545	+
GWHAAZE00000003	exon	23550080	23550196	+
GWHAAZE00000003	exon	23550312	23550415	+
GWHAAZE00000003	exon	23552294	23552360	+
GWHAAZE00000003	exon	23552538	23552671	+
GWHAAZE00000003	exon	23552764	23552812	+
GWHAAZE00000003	exon	23553119	23553190	+
GWHAAZE00000003	exon	23553280	23553381	+
GWHAAZE00000003	exon	23553512	23553579	+
GWHAAZE00000003	exon	23554526	23554678	+
GWHAAZE00000003	exon	23556543	23556600	+
GWHAAZE00000003	CDS	23547357	23547366	+
GWHAAZE00000003	CDS	23547463	23547545	+
GWHAAZE00000003	CDS	23550080	23550196	+
GWHAAZE00000003	CDS	23550312	23550415	+
GWHAAZE00000003	CDS	23552294	23552360	+
GWHAAZE00000003	CDS	23552538	23552671	+
GWHAAZE00000003	CDS	23552764	23552812	+
GWHAAZE00000003	CDS	23553119	23553190	+
GWHAAZE00000003	CDS	23553280	23553381	+
GWHAAZE00000003	CDS	23553512	23553579	+
GWHAAZE00000003	CDS	23554526	23554678	+
GWHAAZE00000003	CDS	23556543	23556600	+

Transcript Sequence
>GWHTAAZE010766 ATGGCAACCACAACAGCTCCTCGTTCTTTTCTACAAGTGGCTTCTACAGAGGAAGTTGTTTCCCCTCTCAGAGTTGTCCAGATTGAGGGACTGGTTATATTAAAGATTATCAAACACTGCAAAGAGTTTTCACCAGCTCTTGTCACAGGTCAACTTCTTGGGTTAGATGTTGGCTCTGTTCTTGAAGTAACTAACTGTTTCCCATTCCCGATCCGGGAGGAAGATGAGGAAATTGAAGCAGATGGCGCTAATTATCAGCTTGAGATGATGAGATGCTTGAGAGAGGTCAATGTTGATAACAACACTGTTGGATGGTACCAATCAACTTTATTGGGTTCTTTCCAGACAGTGGAACTGATCGAGACCTTTATGAATTACCAGGAGAATATAAGGCGGTGCGTATGCATCATTTATGATCCATCAAAGTCCAATCAGGGTGTCTTAGCTTTGAAGGCCTTGAAGCTTTCTGATTCGTTTATGGATCTTTACCGCTCCAATAATTTTACGGGCGAGAAATTGCGAGAGAAAAATCTCTCATGGGTGGACATCTTTGAAGAGATACCGATAAAGGTCTCAAACTCTGCTCTTATCAGCGCCTTTATGACTGAACTAGAAGCTGACACACCAGTAACCCAATGCGATTATGATAGGTTACAATTGTCAACCAATCCATTTATGGAGAGGAATGTTGAATTTCTGATTGAGTGCATGGATGACTTGTCAATGGAACAGCAAAAGTTCCAATTTTACTATCGCAACTTGTCACGCCAGCAAGCCCAACAGCAAGCATGGCTGCAGAAGAGAAGGTCTGAGAACATGGCACGTAAGGCTGCAGGAGAAGAGCCATTGCCAGAGGAGGATCCCTCAAATCCCATATTTAAGCCACTCCCCGAGCCATCACGCCTCGATAGCTTTCTCATAACCAATCAAATTTCCAATTACTGCAACCAAATTAATGGTGTTGCGGGACAGAGTTTCAGCAAACTGTATTTGATGAAGGCTCTCCATGAGAATTGA

Network for GWHGAAZE010754

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01398.22	JAB	24	127	1.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
K03247	EIF3H	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0005852	cellular_component	eukaryotic translation initiation factor 3 complex
GO:0005515	molecular_function	protein binding
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.430
	SRR3591706	second leaf	7.767
	SRR3591707	mature leaf	6.466
	SRR3591708	Shoot apex	19.765
	SRR3591709	Stem	6.514
	SRR3591710	White floral bud	6.065
	SRR3591711	White flower	8.643
	SRR3591712	Green floral bud	15.397
	SRR3591713	Yellow flower	8.674
SRP173429	SRR8316895	Juvenile bud stage	26.796
	SRR8316896	Juvenile bud stage	37.158
	SRR8316897	Juvenile bud stage	5.435
	SRR8316894	Third green stage	16.238
	SRR8316900	Third green stage	48.325
	SRR8316901	Third green stage	41.314
	SRR8316898	Complete white stage	20.036
	SRR8316899	Complete white stage	37.179
	SRR8316903	Complete white stage	27.356
	SRR8316902	Silver flowering stage	29.279
	SRR8316904	Silver flowering stage	32.128
	SRR8316905	Silver flowering stage	16.940
	SRR8316906	Gold flowering stage	48.013
	SRR8316907	Gold flowering stage	48.045
	SRR8316908	Gold flowering stage	25.243
SRP132670	SRR6706286	Control	17.390
	SRR6706287	Light intensity 50%	19.701
	SRR6706288	Light intensity 20%	20.733
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.782
	CNS0095593	Slightly white alabastrum(diploid) 2	34.308
	CNS0095594	Slightly white alabastrum(diploid) 3	26.281
	CNS0095595	Whole white alabastrum(diploid) 2	22.819
	CNS0095596	Whole white alabastrum(diploid) 3	29.163
	CNS0095597	Whole white alabastrum(diploid) 4	21.670
	CNS0095598	Silvery flower (diploied) 1	22.777
	CNS0095599	Silvery flower (diploied) 2	23.425
	CNS0095600	Silvery flower (diploied) 3	32.768
	CNS0095601	Golden flower (diploid) 1	16.373
	CNS0095602	Golden flower (diploid) 2	27.548
	CNS0095603	Golden flower (diploid) 3	25.828
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.275
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.343
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.982
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.309
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.246
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.540
	CNS0095610	Silvery flower (tetraploid) 1	10.873
	CNS0095611	Silvery flower (tetraploid) 2	8.989
	CNS0095612	Silvery flower (tetraploid) 3	9.342
	CNS0095613	Golden flower (tetraploid) 1	5.965
	CNS0095614	Golden flower (tetraploid) 2	10.685
	CNS0095615	Golden flower (tetraploid) 3	8.923
CRA001975	CRR073297	Stem 1	26.324
	CRR073298	Stem 2	25.520
	CRR073299	Stem 3	29.276
	CRR073300	Leaf 1	22.578
	CRR073301	Leaf 2	29.177
	CRR073302	Leaf 3	30.909
	CRR073303	Juvenile bud 1	25.284
	CRR073304	Juvenile bud 2	24.867
	CRR073305	Juvenile bud 3	35.436
	CRR073306	Third green 1	30.237
	CRR073307	Third green 2	32.218
	CRR073308	Third green 3	28.443
	CRR073309	Second white 1	44.445
	CRR073310	Second white 2	29.659
	CRR073311	Second white 3	32.386
	CRR073312	Silver flowering 1	51.178
	CRR073313	Silver flowering 2	48.517
	CRR073314	Silver flowering 3	35.146
	CRR073315	Gold flowering 1	16.772
	CRR073316	Gold flowering 2	18.414
	CRR073317	Gold flowering 3	12.175
	CRR073318	Tawny withering 1	32.268
	CRR073319	Tawny withering 2	26.533
	CRR073320	Tawny withering 3	34.024