Gene detail

Detail information of GWHGAAZE010727

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275364.2	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Vitis vinifera]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	3E-136	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|F6H5Q2\|F6H5Q2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47523.1}
TAIR10	AT4G08850.1	2E-109	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	20572443	20574714	-
GWHAAZE00000003	mRNA	20572443	20574714	-
GWHAAZE00000003	exon	20572960	20574714	-
GWHAAZE00000003	exon	20572443	20572847	-
GWHAAZE00000003	CDS	20572960	20574714	-
GWHAAZE00000003	CDS	20572443	20572847	-

Transcript Sequence
>GWHTAAZE010739 ATGGGTTCAGTTGCTTGCATCAATTATTTTTTGGCACTAGTAGTAGCAGCGACTGTATTGCTACAGGCAGGCATTATTGAAGCTTCAGCAGTAACATCTACTACTACTAACAAAATTAATTCGTCACAACAGCATTGGTTTAAAAGAGAGTTTGATGACCAATCTAATCACTGTAGCTGGGAGGGCATTAGTTGCAACGAGGCAGGAAGTGTTACTTCTCTATCATGCCCTCAAAATCCTTATTTATATGGTGAACCTCGTATAGCTGAGCTTAATTTGCCTTCATATCAAAGCCTTGAAATCCTTGACCTTAGTGGTTGTGGGCTTGCAGGAACCATTCCACATGAAATTGGTCGGCTTTCTAAACTGACCAGACTTTCTCTTTCTCGCAATATTCTTTCAGGTGGCCTCCCCGTTTCACTGGCCAACCTCACCAGCCTAACATGGCTTAACCTTAGTAGTAACTCATTTTATGGACCAATCCCATCCGAAATAGGAAATCTCACGAATCTTTCATTCTTAGACCTTGGTAACAACTACTTTTCAGGTCCAATCCCATCCGAAATAGGAAATCTCACAAATCTTTCATTCTTAGACCTTGGTAACAACTACTTTTCAGGTCTAATCCCTTCATCGATATGTGTCTTAACCCATTTAACCTTCTTGGACCTTTCTGGAAATCGACTCACCGGGTTCATTCCGTTAGCAATACAGAATCATAGCAATCTCCTTGAGGGGAACAACCTTTTGGGTACCATCCCTTCGACTATGGGACTCTTGACTAATTTAACACATATAGACCTTTCTCACAATTCTTTTAATGGCACCATACCTGCTAATCTTTCTTACTTGTCGAAATTAAACTACATAGATCTGTCATACAATAAACTTGTTGGCCCTGTCCCCACCAACCTATGGGACCTGTGTTCCTCCTCAGTTATTCAGCTGCTAGGCAATGAGGGGTTGGAGGGCAACCTCAGTTGCGAATTAAATATAAAGGACCAGAACAAGGGGAGGAATAAAGTTAGGCACCTTATCCTTATTTTTATTCTTCCGGTGATCATTTCACTTGCCATGATGATGATCCTCGGTGTCCATAGGTTCCTTTCTCGGCATAAAGTTGTCAAAAACAAAAGCTTGTCAGTAACAATGAAGCATGGAAATATGTGCTCCATATGGAATTATGATGGTACAATTGCCTATGAAGACATCATCAGGTCGACAAATGACTTTGATATCGAACATTGCATTGGAACCGGCGGTTATGGCAGTGTTTACAGGGCACAACTGCCAAGTGGAAAAGTAGTCGCCTTAAAGAAACTTCATCGTTTTGAAGCCGAGGAGCCAGCTTTCGACAAGAGCTTCAAGAACGAGGTACAAGTGTTATCAAATATAAGACATAAAAACATTGTCAAGCTTTACGGGTTTTGTTTACACAATCGGTGCATGTTCTTGGTTTATGAATACATGGAAAGGGGAAGCTTATTTTATGCCTTAAGAGACGATGTCGCTGCTATTGAACTAGATTGGATTGAAAGGGTGAGCATTGTTAAAGGGATAGCACATGCTTTATCTTACATGCATCATGATTGTACTCCACCTATTGCTCATCGGGACATTTCAAGTAATAACATTCTCTTGAACTCAAAACAAGACGCATTTGTAGCCGACTTTGGTGCAGCTAGATTGCTATCTCCTGATTCGTCCAACCAAACTTTAATTGCAGGCACCGTGGATATATTGCTCCAGGTGAACGCATTTTTAATTAAGTTTTCTTTTCATGTGTTTCACTGGGCTATGCATGCAGAACTTGCCTACACCATGGTGGTTACTGAAAAATGTGATGTATATAGCTTCGGGGTTGTGGCACTTGAAATATTAATGGGAAGGCATCCGGGAGATCTCATTTCATCATTAATGTCGCCGTCTACAAAAAATTCAATATTGAATGATGTGTTGGACCCACGACTCTCACGTCCAACGGATAGATTAGTTGAATGGGACCTTGTTCTGATTATGAGGCTAGCATTTTCATGCTTAAGTTCTAATCCCAAATCACGGCCGACAATGCAAAGCGTGTCACAACAGTTTCTAGTTCGTAGGATGCCACTACCTAAACCTCTTCATTTAATTTCATTACTAGAACTACATAATCCATAA

Network for GWHGAAZE010727

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	98	156	5.10E-08
PF13855.7	LRR_8	170	229	6.00E-07
PF00560.34	LRR_1	262	282	0.6
PF00069.26	Pkinase	413	695	9.90E-39

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.062
	SRR3591707	mature leaf	1.414
	SRR3591708	Shoot apex	0.067
	SRR3591709	Stem	0.801
	SRR3591710	White floral bud	0.049
	SRR3591711	White flower	0.415
	SRR3591712	Green floral bud	0.178
	SRR3591713	Yellow flower	0.756
SRP173429	SRR8316895	Juvenile bud stage	0.378
	SRR8316896	Juvenile bud stage	0.555
	SRR8316897	Juvenile bud stage	0.179
	SRR8316894	Third green stage	0.031
	SRR8316900	Third green stage	0.022
	SRR8316901	Third green stage	0.033
	SRR8316898	Complete white stage	0.061
	SRR8316899	Complete white stage	0.419
	SRR8316903	Complete white stage	0.106
	SRR8316902	Silver flowering stage	0.099
	SRR8316904	Silver flowering stage	0.057
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.096
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.184
SRP132670	SRR6706286	Control	0.235
	SRR6706287	Light intensity 50%	0.239
	SRR6706288	Light intensity 20%	0.163
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.132
	CNS0095593	Slightly white alabastrum(diploid) 2	0.176
	CNS0095594	Slightly white alabastrum(diploid) 3	0.333
	CNS0095595	Whole white alabastrum(diploid) 2	0.229
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.404
	CNS0095598	Silvery flower (diploied) 1	0.505
	CNS0095599	Silvery flower (diploied) 2	0.232
	CNS0095600	Silvery flower (diploied) 3	0.293
	CNS0095601	Golden flower (diploid) 1	0.532
	CNS0095602	Golden flower (diploid) 2	0.439
	CNS0095603	Golden flower (diploid) 3	0.322
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.028
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.145
	CNS0095611	Silvery flower (tetraploid) 2	0.021
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.027
	CNS0095615	Golden flower (tetraploid) 3	0.093
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.077
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.021
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.074
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.757
	CRR073316	Gold flowering 2	0.632
	CRR073317	Gold flowering 3	0.240
	CRR073318	Tawny withering 1	0.085
	CRR073319	Tawny withering 2	0.103
	CRR073320	Tawny withering 3	0.000