Gene detail

Detail information of GWHGAAZE010650

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP21206.1	1.532E-115	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	8E-60	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|A0A068VKJ5\|A0A068VKJ5_COFCA	6E-116	Coffea canephora DH200=94 genomic scaffold, scaffold_2795 {ECO:0000313\|EMBL:CDP21206.1}
TAIR10	AT1G35710.1	2E-47	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	16667113	16668704	-
GWHAAZE00000003	mRNA	16667113	16668704	-
GWHAAZE00000003	exon	16667113	16667127	-
GWHAAZE00000003	exon	16667211	16668704	-
GWHAAZE00000003	CDS	16667211	16668704	-
GWHAAZE00000003	CDS	16667113	16667127	-

Transcript Sequence
>GWHTAAZE010662 ATGGATTCGGTTGCTTGCATCAATTATCGTTTGGCAGTAATAGTACTGGTGACTGTATGGCTAGCCGACATTATTAAAGTTTTAGCAGCAACATCAACTAATATTACTGCCAATCATAATAATTCCTCAAAACCGCCTTGGTTTAATAGAGAGTCTGAAGCTCTAGAGGGTATCCGCTGGCGGTGGAATGTGGACTCGTCTACGAGTCACTGTAATTGGGTCGGCATTGGTTGCAATGAGGCAGGAAGTGTCACCTCGATACACTGTCCTTATTACTATGTCAGAGCTCATATAGATGAGCTTAACTTGACTTCATTTCCAAACCTTGAAGTCCTTGATCTTTCCAGTTGTTGGCTTGATAGAACCATCCCATATGAAATCGGTATGCTTTCCAAACTGACTAAACTTTCACTTTCTTACAATTCTCTTTCAGGTAGCCTACCCTCTTCACTAGCCATTCTTACCAGCCTAACATTCCTCGACATTTCTCATAATAGCTTGAGTGGCTCCATTCCTTCCTCTGTTGGTTTCATGACCCATTTAACAGATTTGGACCTTTCTGGAAATCAACTCACCGGATCCATCCCATCCGAATTAGGAAATCTGAAAAATTTGGAATATTTGCACCTTGGTGAGAACAACTTTGCAGGTCCAATCCCTTCATCTGTTGGTTTCATGACCCATTTAACATATTTGAACCTTTTTGGAAATCAACTCACCGGGTTCATCCCATCCGAATTAGGAAATCTGAAAATTTTGGAATATTTGGACCTTCATTACAACCGCTTTTCGGGTCCAATCCCTTTGACTATAGGACTCTTGACTAAATTAACATATCTAGAGCTTCGTGATAATTTTCTTAATGGCACCATACCCGCTAATCTTTCTTACTTGTCAAACATAAACTTCATAGATTTCTCCTACAATAAACTTATTGGCCCTCTCCCCACCAGCCTTTGCGAATTGTGTTCCTCCTCAAAAATTAATTTGGTTGGCAATGATGGCTTCGAGGGAAACCTTGGTTGTGAATTTGAAATGAAGGACCAAAACAAGAAGATGAGTAGAGTTAGGCACTTAATCCCCATTATTATTCTTCCAATCACCATTTCACTTGCCTTGTTGATCATTCTTGCCCATAGGTTCTTTTCTTCATGTAAGGCTATCAATAACAAAAGTGTGTCAGTGACAATGAAGCACGGAAATATGTGCTCCATTTGGAATTATGATGGGACAATTGCATACGAAGACATCATCAGATCGATAAATGACTTTGATATCGAACATTGCAATGGGACAGGCGGTTATGGCAGCGTTTATAGGGCTCAACTGTCAAGTTGCAAAGTAGTTGCCTTAAAGAAACTTCATCGTTTTGAAGCCGAGGAGCCAGCTTTCGACAAGAGCTTCAAGAATGAGATTGAAATGTTATCAAATATAAGACATAAAAACATTGTCAAGCTTTATGGGTTCTGTTTGCACAACAGGTGCAAGTTCCTTGGTGAGCGTCATTAA

Network for GWHGAAZE010650

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	107	167	3.70E-07
PF12799.8	LRR_4	179	215	2.90E-07
PF13516.7	LRR_6	227	240	0.24
PF00069.26	Pkinase	431	492	2.30E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.062
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.023
	SRR3591711	White flower	0.049
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.282
	SRR8316896	Juvenile bud stage	0.399
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.136
	SRR8316900	Third green stage	0.124
	SRR8316901	Third green stage	0.409
	SRR8316898	Complete white stage	0.111
	SRR8316899	Complete white stage	1.261
	SRR8316903	Complete white stage	0.043
	SRR8316902	Silver flowering stage	0.219
	SRR8316904	Silver flowering stage	0.091
	SRR8316905	Silver flowering stage	0.143
	SRR8316906	Gold flowering stage	0.306
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.043
SRP132670	SRR6706286	Control	0.682
	SRR6706287	Light intensity 50%	0.560
	SRR6706288	Light intensity 20%	0.286
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.302
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.026
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.361
	CNS0095597	Whole white alabastrum(diploid) 4	0.008
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.328
	CNS0095601	Golden flower (diploid) 1	0.061
	CNS0095602	Golden flower (diploid) 2	0.143
	CNS0095603	Golden flower (diploid) 3	0.143
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.221
	CRR073298	Stem 2	0.117
	CRR073299	Stem 3	0.084
	CRR073300	Leaf 1	0.194
	CRR073301	Leaf 2	0.244
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.147
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.182
	CRR073316	Gold flowering 2	0.233
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000