Gene detail

Detail information of GWHGAAZE010648

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP21206.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	2E-137	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|A0A068VKJ5\|A0A068VKJ5_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_2795 {ECO:0000313\|EMBL:CDP21206.1}
TAIR10	AT1G35710.1	2E-122	Protein kinase family protein with leucine-rich repeat domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	16642995	16645374	-
GWHAAZE00000003	mRNA	16642995	16645374	-
GWHAAZE00000003	exon	16642995	16643344	-
GWHAAZE00000003	exon	16643511	16645374	-
GWHAAZE00000003	CDS	16643511	16645374	-
GWHAAZE00000003	CDS	16642995	16643344	-

Transcript Sequence
>GWHTAAZE010660 ATGGGTTCGGTTGCTTGCATCAATTATCGTTCGGCAGTAATAGTACTGGTGACTGTATGGCTAGCCGACATTATTAAAGTTTTAGCAGCAACATCAACTAATATTACTGCCAATCATAATAATTCCTCAAAACCGCCTTGGTTTAATAGAGAGTCTGAAGCTCTGGAGGGTATCCGCCGGCGGTTGAATGCGGACTCGTCTACTAGTCATTGTAAGTGGGTTGGCATTGGTTGCAATGAGGAAGGACGTGTCACCTCGATATATGGTCCTTATTACTTTGCCGGAGTTCATATAGATGAGCTTAACTTGAGTTCATTTCCAAACCTTGAAGTCCTTGATCTTTCCCGTTGTTTGCTTGATGGAACCATCCCATATGAAATCGGTATGCTTTCCAAACTGACCAAACTTTCTCTTTCTCAAAATTTTCTTTCAGGTAGCCTACCCTCTTCACTGGCCAATCTTACCAGCCTAACATTCCTCGACATTTCTTGGAATACCTTGAATGGCCCCATTCCATCCAAAGTATTAGGGAATCTAAAGAATTTGAGATGCCTCAACCTTAGTAGAAACTGGTTTTCTGGTCCAATCCCTTCCTCTATTGGTTTCATGACCCATTTAACATATTTGGACCTTTTAGGAAATCAACTCACCAGGTCCATCCCATCCGAATTAGGAAATCTGAAAATTTTGGAACATTTGCACCTTGGTGGGAACAACTTTTCAGGTCCAATCCCTTCATCTGTTGGTTTCATGACCCATTTAACATATTTGAACCTTTTTGGAAATCAACTCACTGGGTCCATCCCATCCGAATTAGGAAATCTGAAAAAATTGGAATATTTGTACCTTAATTCCAACCGCTTTTCAGGTCCAATCCCTTCGACTATAGGACTCTTGACTAAATTAACATATCTAGACCTTTATGAGAATTTATTTAACGGCACCATACCTGCTAATCTTTCTTACTTGTCAAACGTAAACTACATAGATCTCTCATACAATGAACTTGTTGGCCCCCTTCCCACCAGCCTTTACGAATTGTGTTCCTCCTCAAAAATTAATTTGGTCGGCAATGATGGCTTCGAGGGAAACCTTGGTTGTGAATTTGAAATGAAGGACCAAATCAAGAAAATGAGTAGAGTTAGGCACTCTATCCCCATTATTATTCTTTCAGTCACCATTTCACTTGCCTTGTTGATCATCCTTGCCCACAGGTTCTTTTCTTGGTGTAAGGCTGTAATAAACAAAAGTGTGTCACTGACAATGAAGCACGGAAATATGTGCTCCATTTGGAATTATGATGGGACAATTGCATACGAAGACATCATCAGATCGACAAATGACTTTGATATCGAACATTGCATTGGGACAGGCGGTTATGGCAGTGTTTATAGGGCTCAGCTGCCAAGTGGTAAAGTAGTTGCCTTAAAGAAACTTCATCGTTTTGAAGCCGAGGAGCCAGCTTTCGACAAGAGCTTCAAGAATGAGGTTGAAATGTTATCAAATATAAGACATAAAAACATTGTCAAGCTTTATGGGTTCTGTTTGCACAACAGGTGCATGTTCCTTGTTTATGAATACATGGAAATGGGAAGCTTATTCTATGCCCTAAGAGACGACGCTGAGGCTGTTGAGTTGGATTGGACTAAAAGGGTGAGCGTCATTAAAGGCATAGCACATGCTTTATCTTACATGCATCACGATTGTACTCCACCTATTGTTCATCGGGACATTTCAAGTAACAACATTCTCTTGAACTCAAAACAAGACGCATTTGTAGCCGACTTTGGTGCAGCTAGATTGTTATCTCCAGATTCATCCAACCAAACTGTAATTGCAGGCACCCGCGGATATATTGCTCCAGAGCTTGCCTACACCATGGTGGTTACTGAAAAATGCGATGTATATAGCTTTGGGGTTGTGGCGCTTGAAATATTAATGGGAAAGCACCCAGGAGATCTGCTTTCATCATTAACATCCCCGTCTACAAGAAATTCAATGGTGAATGATGTGTTGGACCCACGACTCTCACGTTCAATTGATCGATTAGTTGAGTGGGACATTGTTATGGTTATGAGGCTGGTGTTTTCATGCATAAGTTCTAATCCCAAATCACGGCCAACAATGCAAAGCGTGTCACAACAGTTTCTTATTCGTAGGATGCCACTACCCAAACCTCTTCATTTAATTTCACTGTTGGAGCTACAGAATTAA

Network for GWHGAAZE010648

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	107	167	4.50E-07
PF00560.34	LRR_1	181	202	0.86
PF12799.8	LRR_4	252	292	8.90E-08
PF00069.26	Pkinase	451	715	2.50E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.137
	SRR3591706	second leaf	0.070
	SRR3591707	mature leaf	0.085
	SRR3591708	Shoot apex	0.033
	SRR3591709	Stem	0.093
	SRR3591710	White floral bud	0.029
	SRR3591711	White flower	0.084
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.036
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.046
	SRR8316897	Juvenile bud stage	0.062
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.132
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.036
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.038
	SRR6706287	Light intensity 50%	0.011
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.086
	CNS0095594	Slightly white alabastrum(diploid) 3	0.067
	CNS0095595	Whole white alabastrum(diploid) 2	0.156
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.025
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.258
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.045
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.099
	CRR073298	Stem 2	0.054
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.033
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.034
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.161
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.104
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.094
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.184
	CRR073320	Tawny withering 3	0.000