Gene detail

Detail information of GWHGAAZE010611

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010268233.1	2.38374E-82	PREDICTED: endochitinase PR4-like [Nelumbo nucifera]
Swissprot	tr\|Q6K8R2\|CHI6_ORYSJ	3E-70	Chitinase 6 (Precursor)
trEMBL	tr\|A0A068URE9\|A0A068URE9_COFCA	1E-80	Coffea canephora DH200=94 genomic scaffold, scaffold_48 {ECO:0000313\|EMBL:CDP10829.1}
TAIR10	AT3G54420.1	4E-51	homolog of carrot EP3-3 chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	15482966	15484663	+
GWHAAZE00000003	mRNA	15482966	15484663	+
GWHAAZE00000003	exon	15482966	15483177	+
GWHAAZE00000003	exon	15483812	15483937	+
GWHAAZE00000003	exon	15484285	15484663	+
GWHAAZE00000003	CDS	15482966	15483177	+
GWHAAZE00000003	CDS	15483812	15483937	+
GWHAAZE00000003	CDS	15484285	15484663	+

Transcript Sequence
>GWHTAAZE010623 ATGCTAATAAAATCCATTCTTCTGGCCGGAGTTCTCACCAGTGTCTTGCAGGAATCGGTCGCTGGTCAGAACTGTGGGTGTGCCCCAGACTTATGTTGTAGCCAGTATGGATATTGCGGCACTACCAATGGGTACTGTGGCCCGGGGTGTCTGGAGGGCCCTTGCATCTTGCCCCCAAACAATGTCAATGTGGCAGATCTTGTGACAGATACATCTAGACTGGGTTTGATTGAGGAGGTGGAGAGACAAGATTTGAACCCTAACCGTGCTTATAGAATCTCACTGTACCATTATGTTATGATCCCAGATCTGAAAGGACATACTCAAGCTAAATTTTGTACGAACTATTGCGATCCGAGTAACACGCAGTATCCCTGCGTACCCGGCAAGGGATATTACGGCCGAGGTCCTCTTCAGATCAAATGGAATTACAATTACGGACCAGCCGGGAATGCCATTGGCTTCGATGGTCTAAAGAACCCTGATTTTGTGTCCTCAAATGAGGTTGTTGCTTTTAAGACTGCCTTGTGGTTCTGGATGGAAAACGTTCACTCAATCATAACTTCTGGCCAAGGGTTTGGTGAAACCATTCGTGCTTTTAACGGTGGACAAGAATGTGATGGTGGAAAACCAGGTATCGGTACTGCCCGAGTCAATTTTTACACAGATTATTGTCGCCAATTTGGTATTTCTCCTGGCAATAATCTTCGATGCTAG

Network for GWHGAAZE010611

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00187.20	Chitin_bind_1	24	55	1.20E-06
PF00182.20	Glyco_hydro_19	112	238	3.50E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0008061	molecular_function	chitin binding
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.505
	SRR3591706	second leaf	2.271
	SRR3591707	mature leaf	7.909
	SRR3591708	Shoot apex	0.690
	SRR3591709	Stem	813.152
	SRR3591710	White floral bud	12.147
	SRR3591711	White flower	11.297
	SRR3591712	Green floral bud	1.597
	SRR3591713	Yellow flower	8.934
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.187
	SRR8316897	Juvenile bud stage	0.517
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.462
	SRR8316901	Third green stage	0.295
	SRR8316898	Complete white stage	0.980
	SRR8316899	Complete white stage	2.785
	SRR8316903	Complete white stage	3.963
	SRR8316902	Silver flowering stage	0.939
	SRR8316904	Silver flowering stage	0.498
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.064
	SRR8316907	Gold flowering stage	0.953
	SRR8316908	Gold flowering stage	2.179
SRP132670	SRR6706286	Control	0.260
	SRR6706287	Light intensity 50%	0.190
	SRR6706288	Light intensity 20%	0.040
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.055
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.028
	CNS0095596	Whole white alabastrum(diploid) 3	0.127
	CNS0095597	Whole white alabastrum(diploid) 4	0.083
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.571
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.384
	CNS0095603	Golden flower (diploid) 3	0.232
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.334
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.037
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.390
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.105
	CRR073306	Third green 1	0.031
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.009
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.024
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.065
	CRR073319	Tawny withering 2	1.324
	CRR073320	Tawny withering 3	2.780