Gene detail

Detail information of GWHGAAZE010361

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006446084.1	0	hypothetical protein CICLE_v10017805mg [Citrus clementina]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	6E-124	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|F6H5Q2\|F6H5Q2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47523.1}
TAIR10	AT4G08850.1	1E-105	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	4944961	4947435	-
GWHAAZE00000003	mRNA	4944961	4947435	-
GWHAAZE00000003	exon	4944961	4945313	-
GWHAAZE00000003	exon	4945487	4946357	-
GWHAAZE00000003	exon	4946680	4947435	-
GWHAAZE00000003	CDS	4946680	4947435	-
GWHAAZE00000003	CDS	4945487	4946357	-
GWHAAZE00000003	CDS	4944961	4945313	-

Transcript Sequence
>GWHTAAZE010373 ATGATTTCTGTTACTTCAATCAATTATTGTTTAGCAGCAATAGTAGTGCTGGTGACTCTATGGCTGCCAAGCATTATTCAAGTCTTAGCAGTAACATCAACTACTACTCCTATTACATATAATAATAATTCCTCGCAACCGCCTTGGTTTAAAAGAGAGTCTGAAGCTCTAGTGCGTATCCGTTGGTGGTGGAATGTTCACCCGTCTACGAATCACTGTGATTGGGACGGCATTGAATGCAACGAGGCAGGAAGTGTCACTTCTATAACCTGCCCTCGATATCCTTATTTCCATGGTGAAGTTGGTATGGATGAGCTTAACTTGCCTTCATTTCAAAACCTTGAAACCCTTTCTCTTTTCGGTTGTGGGATTAAAGGAACCATCTCATATGATATCGGTATGCTTTCCAAACTGACCATACTTGTTCTTTCTGACAATTCTCTTTCAGGTAACCTACCCTCTTCACTGGCCAACCTCACCAGCCTAACATACCTCGATATTTATAATAATAGTATGAATGGCTCCATTCCATTCAAAGAATTAGGGAATCTAAAGAATTTGAGAAGACTAGACCTTAGTAGCAACTTATTTTCTGGTCCAATTCCTTCTTCTGTTAGTTTCTTGAACCATTTGACACACTTGGACCTTCATAGAAATCAATTCACAGGCAGCCTACCCTCTTCACTGGCCAACCTTACCAAACTAACAAGGCTCTTCATTTCTCGTAATAGTTTGAATGGCTCCATTCCATCTGAAAGCTCTCCTACAATAAACTTGTTGGCCCTATCCCCGCGACCTTTGGGAGTCTCCTCCTCAAAAATTCATTTGTTGGGCAATGATGGCTTCAAAGGAAACCTTAGCTGCGAATTTGAAATGAAGGACCAGAAGAAGAGAACGAGTAGAGTTAGGCACTTTATCCCCATTATTATTCTTCCTGTCACCATTTCACTTGCCTTGCTGATCATCCTCGTCCGCGACTTTTTTCCTTGGCTTAAGGCTATCAAAAACAAAAGTGTTCCAGTATCAACGAAGCATGGAAATATGTGTTCCATATGGAATTATGATGGGACAATTGCATATGAAGACATCATCAGATCGACAAATGACTTTGATATCGAACATTGCATTGGGACTGGCGGTTATGGCAGTGTTTATAGGGCTCAGCTGCCAAGTGGCAAAGTAGTCGCTTTAAAAAAACTTCATCATTTTGAAGCTGAGGAGCCATCTTTCGACAAGAGCTTCAAGAATGAGGTGGAAGTGTTATCAAATATAAGACATAAAAACATTGTCAAGCTTTATGGGTTCTGTTTGCACAATAGATGCATGTTCCTTGTTTATGAATACGTGGAAAAGGGAAGCTTATTCTATGCCCTAAGAGACGATGATGAGGCTATTGAATTGGATTGGACTAAAAGGGTGAACATCGTTAAAGGCATAGTACATGCTTTATCTTACATGCATCACGATTGTACTCCACCTATTGCTCATCGGGACATTTCGAGTAATAACATTCTCTTGAACTCAGAAAGTGACGCATTTGTAGCCGACTTTGGTGCAGCTAGATTGTTATCTCCCGATTCATCCAACCAAACTGTAATTGCGGGCACCCGCGGATATATTGCTCCAGAGCTTGCCTACACCATGGTGGTGACTGAAAAATGTGATGTATATAGCTTTGGGGTTGTGGCACTTGAAATAATAATGGGAAGGCATCCGGGAGATCTCCTCTCAACACTGACATCTCCATCTACAGAAAATCCAACGGTGAACGATGTGTTGGACCCACGACTCTCACTTCCAATGGACCGATTAGTTGAATGGGACATTGTTATGGTTATGAGGCTGGCGTTTTCATGCTTAAGTTCTAATCCCAAATCACGGCCATCAATGCAAAGCGCGTCACAAGAGTTTTTGGTTCACAGGATGCCACTACCCAAACCTCTTCATTTGATTTCGCTGTCGGAGTTACGGAATCCATAA

Network for GWHGAAZE010361

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	186	245	1.10E-07
PF00069.26	Pkinase	372	635	1.40E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.197
	SRR3591706	second leaf	0.071
	SRR3591707	mature leaf	0.120
	SRR3591708	Shoot apex	0.140
	SRR3591709	Stem	0.177
	SRR3591710	White floral bud	1.160
	SRR3591711	White flower	4.853
	SRR3591712	Green floral bud	0.112
	SRR3591713	Yellow flower	0.364
SRP173429	SRR8316895	Juvenile bud stage	0.003
	SRR8316896	Juvenile bud stage	0.050
	SRR8316897	Juvenile bud stage	0.313
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.038
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.026
	SRR8316903	Complete white stage	0.077
	SRR8316902	Silver flowering stage	0.216
	SRR8316904	Silver flowering stage	0.074
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.001
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.076
SRP132670	SRR6706286	Control	0.311
	SRR6706287	Light intensity 50%	0.218
	SRR6706288	Light intensity 20%	0.056
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.043
	CNS0095593	Slightly white alabastrum(diploid) 2	0.065
	CNS0095594	Slightly white alabastrum(diploid) 3	0.355
	CNS0095595	Whole white alabastrum(diploid) 2	0.083
	CNS0095596	Whole white alabastrum(diploid) 3	0.023
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.444
	CNS0095599	Silvery flower (diploied) 2	0.288
	CNS0095600	Silvery flower (diploied) 3	0.036
	CNS0095601	Golden flower (diploid) 1	0.364
	CNS0095602	Golden flower (diploid) 2	0.248
	CNS0095603	Golden flower (diploid) 3	0.145
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.139
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.023
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.553
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.117
	CNS0095611	Silvery flower (tetraploid) 2	0.167
	CNS0095612	Silvery flower (tetraploid) 3	0.312
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.166
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.057
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.013
	CRR073316	Gold flowering 2	2.790
	CRR073317	Gold flowering 3	0.882
	CRR073318	Tawny withering 1	0.048
	CRR073319	Tawny withering 2	0.028
	CRR073320	Tawny withering 3	0.000